Gene [FLAX] | FIBexDB

Lus10031951 [FLAX]

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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10031937 [exp]	95 / 4e-23	AT1G77450	67 / 1e-12	NAC domain containing protein 32 (.1)
Lus10040686 [exp]	54 / 3e-08	AT2G29650	760 / 0.0	anion transporter 1, phosphate transporter 4;1 (.1.2.3)
Lus10006343 [exp]	46 / 4e-06	ND	39 / 0.002
Lus10003334 [exp]	44 / 1e-05	AT1G61110	50 / 1e-07	NAC domain containing protein 25 (.1)
Lus10033676 [exp]	44 / 3e-05	AT3G10480	72 / 4e-13	NAC domain containing protein 50 (.1.2.3)
Lus10040760 [exp]	44 / 4e-05	AT1G13570	157 / 3e-43	F-box/RNI-like superfamily protein (.1)
Lus10041818 [exp]	44 / 5e-05	AT1G13570	154 / 3e-42	F-box/RNI-like superfamily protein (.1)
Lus10035151 [exp]	42 / 0.0002	AT5G51170	306 / 7e-101	unknown protein
Lus10028369 [exp]	40 / 0.0007	AT1G13570	66 / 1e-12	F-box/RNI-like superfamily protein (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.016G027900 [exp]	40 / 0.0004	AT2G24430	66 / 8e-12	Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
Potri.019G031600 [exp]	40 / 0.0004	AT5G18270	328 / 6e-111	Arabidopsis NAC domain containing protein 87 (.1.2)
Potri.006G231300 [exp]	40 / 0.0006	AT5G62380	61 / 5e-10	VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1)
Potri.019G063000 [exp]	39 / 0.0007	AT1G79580	56 / 4e-09	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
		PF02365 [flax] [poplar]	NAM	No apical meristem (NAM) protein

Representative CDS sequence

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>Lus10031951 pacid=23161164 polypeptide=Lus10031951 locus=Lus10031951.g ID=Lus10031951.BGIv1.0 annot-version=v1.0

ATGGACGAACACGTTTACTTTGATTTCGATGAGCTCTCCTACCCTGAGGAGTATAAACTCAATATGGTCGCTCTATTTGCTTCGCTTCCTTCGCTTGAGC

AGCTGAATCTTGCCCGTCAATTGCTACTACTCGAGTCCAATCTAAATCACCCCGAATCAGTGGGCAGCCTAACGAAGTTGTTGGAAGCAGAGGATTGCGG

TGGAGTAGTTTGTGTACAGCATCTTCAAGAGTTGAACATCAAGGGTAGTCTTGGTATGAAGGTTGAGCTAGACTTGGGCAAACTCTCAGTGAGTACATCA

CTACCAACAATTCTCACATATTCAGTTTCGACTTTTCTCTCAAGAAACTCGGCGCGCGTTCCAAAGACAACAATGGAGTTTGACGATGGTTTTGGGAGGC

CGGCCGGGTTCCGATTCCACCCGAAAGACGAGGAGCTTGTCCTTCTGTACCTCCTCAAGAAGCTACGCGGGAGACCACTACCGTGCGCGTCGGCGGTTAG

GGATTGCGATCTTTACGGAGAGCTCGAGCCATGGGATATATGGTCCAAGTACCACCACCACGGTGATGACGACGAGGAGGAGATCTACTTCTTATGA

AA sequence

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>Lus10031951 pacid=23161164 polypeptide=Lus10031951 locus=Lus10031951.g ID=Lus10031951.BGIv1.0 annot-version=v1.0

MDEHVYFDFDELSYPEEYKLNMVALFASLPSLEQLNLARQLLLLESNLNHPESVGSLTKLLEAEDCGGVVCVQHLQELNIKGSLGMKVELDLGKLSVSTS

LPTILTYSVSTFLSRNSARVPKTTMEFDDGFGRPAGFRFHPKDEELVLLYLLKKLRGRPLPCASAVRDCDLYGELEPWDIWSKYHHHGDDDEEEIYFL

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10031951 [exp]	0	1

Lus10031951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.