Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15700 1264 / 0 DNA/RNA polymerases superfamily protein (.1.2) AT1G68990 1235 / 0 MGP3 male gametophyte defective 3 (.1.2) AT2G24120 1152 / 0 PDE319, SCA3 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035150 [exp] 1920 / 0 AT5G15700 1273 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10005097 [exp] 1442 / 0 AT5G15700 1289 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10034355 [exp] 1422 / 0 AT2G24120 1276 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10019208 [exp] 1204 / 0 AT1G68990 1245 / 0.0 male gametophyte defective 3 (.1.2) Lus10036844 [exp] 1176 / 0 AT1G68990 1244 / 0.0 male gametophyte defective 3 (.1.2) Lus10022181 [exp] 1114 / 0 AT2G24120 1300 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10010771 [exp] 676 / 0 AT2G24120 814 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10010770 [exp] 422 / 2e-140 AT2G24120 464 / 2e-157 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10019207 [exp] 43 / 0.0009 AT1G68990 73 / 1e-14 male gametophyte defective 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G105801 [exp] 1333 / 0 AT5G15700 1331 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Potri.004G111600 [exp] 1319 / 0 AT5G15700 1326 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Potri.008G112800 [exp] 1296 / 0 AT1G68990 1269 / 0.0 male gametophyte defective 3 (.1.2) Potri.010G136700 [exp] 1295 / 0 AT1G68990 1248 / 0.0 male gametophyte defective 3 (.1.2) Potri.018G103300 [exp] 1169 / 0 AT2G24120 1381 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Potri.006G181100 [exp] 1152 / 0 AT2G24120 1359 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00940 [flax] [poplar] RNA_pol DNA-dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Lus10031952 pacid=23161083 polypeptide=Lus10031952 locus=Lus10031952.g ID=Lus10031952.BGIv1.0 annot-version=v1.0 ATGTCCAATCCCACTCCCCCACTTCTCTCCGCTAGAGAATTCCACCACTTCCTCTTCTTCAACACTACTCCTTCCGTCCTCTCCCCATTCCCCCCCACCG CCACCCAACCCATTTCAAGAATCCACCGGAAGACGACGTATGCCTCATTAGGGCACACTTTCTGCCCCAAATCCACACCGGAAGTTTTGACGCGTGCGAG CGTAGCAACGGGGGCGGTTACATCGCCGCCGGCGGAAGAAGCTGAAGAAGAAGAGGAAGAAGATTCCGCCTTTTTTGCGGCGGAAGTGAAGGAATTGCTG ATGGAACTCAGGAAAGAACAGCGGGAGGTTCCTGCTAGGAAGAGACTGGAAAGAATTGCGCCTGGGATGGAATGGAAAAAGTATGAGGAGTTGAAGAGGA GGCAAGTTAAGATTGAGACTGAAGCGTGGGAGAAGGCCGCGGCTGAGTATCGGCAGCTTCTTAAGGAGATGTGTGAGAATAAGTTGGCTCCTAGTTTGCC TTACATGAAAAGCTTGTTCCTTGGTTGGTTCGAGCCGTTTAGGGATACGATTCTGAAAGAGCAACAGTTGATGAGGCAAGGGAAGTGCAGGGCGTCCTAT GCTCCCTATTTTGATCTCTTGCCTGCTGACATGATGTCTGTTATCACAATGCATAAGCTGATGGAACTGTTGATGACTGTTGGGGAGCATGGTTCTGTAA AGGTCGTCAATGCGGCTATTGCTGTTGGCGATGCCATTGAACAGGAGATCAGAATAAAAAACTTCCTGGACAAAACAAAGAAGAAAAGGGCAGCTAAAGC TGAGAAAGTTGAAGATGGTGAAGCTGCTGTGGCGGCTAAGGAGCAAGAGAAAATGAGACGGAAGGTCATTGAGTTAATTAGGAAACAGAAGTTACCTGCA GTTAGACGAATGGTGAAGGGTTATGATGAGTCAAGACCCTGGAGTCAGGAAGCTAAGGCTAAAGTTGGAAGCCGTGTAATTGAATTACTCATACAAACTG CGTATGTTCAACCTCCGGCTGACCAAATATGTGATGGTCCTCCTGATATTCGACCTGCCTTTATACATACTGTCATAACTATGGCGAAAGAGGATAAGAA GACAGGTAGACAGTGCGGTGTTATTCAGTGTGATCCGGTAGTCTTAAAAGGACTTGAGAGAAGTGCAAGGCACATGGTGATCCCGTACATGCCAATGTTG GTGCCTCCAGTCAAGTGGACTAAGTATGACAAAGGAGCTTACTTTTTCTTGCCTTCCTATATCATGCGCACTCACGGTTCCAAACAACAACGTGAAACAA TGAGAAGGGCCTCTAGGACACAACTACAACCCGTGTTTGAGGCCTTGGATACACTTGGAAGTACAAACTGGAGGATAAATGAAAGGGTACTAGATGTTGT AGATAGCATGTGGAACAGCGGAGGCTCTCTGGCAAATTTAATAGATCGGGAGGATGTTCCATTACCAGAGAAGCCAGATACAGAAGATGAAACTTTACTA ACAAAATGGAGATGGGAATTAAGAAAAGCAAAAAAAGAGAACCGGGAGAGACATAGCCTACGTTGTGACACAGAACTCAAACTTTCTGTAGCACATAAAA TGAAGGATGAAGAAGGCTTTTATTTTCCTCATAACATTGATTTTCGAGGACGTGCATACCCGATGCACCCACACTTGAACCACCTTGGTTCAGATATGAG TCGAGGTGTTTTGGAATTTGCAGAAGGCCGTCCTCTTGGGAACTCAGGTTTGCGATGGCTGAAGATACACCTAGCAAACCTATTCGCTGGTGGCATAGAT AAGTTATCATATGAAGATCGGATAAGTTTTACTGAGAATCACTTATATGACATATTTGATTCTGCGGACAAGCCGCTGGAAGGTCAGCGCTGGTGGTTGC AGGCTGAAGATCCATTCCAGTGCTTGGCAGCTTGTATAAACCTTACCGACGCTTTGAGAAGTTTCACTCCAGAAACTTATGTTTCGCATCTTCCAATTCA TCAGGATGGCTCGTGCAATGGTTTACAGCATTATGCGGCACTTGGAAGGGATAAGCTAGGAGCTGCTGCTGTTAATCTGGTTGCGGCAGAAATCCCTGCT GATGTCTACTCTGACATAGCTGCAAGAGTTCTTGATATCATGCACGAGGATGCATCAAAAGACCCCACAAGCTTTCCTGATGCGTTACTAGCAACAGCAT TGCTCAACCAGGTGGATAGGAAGTTGGTGAAGCAGACAGTGATGACATCTGTATATGGTGTTACCTACGTTGGTGCCAGAGATCAAATCATGAGAAAGTT GAAAGAGCGAGGCACTGAGCTAGGTGATACAAAGATATTTGCCGCTTCTTGCTATGCAGCTAAAGTGACGTTAATTGCACTAGAGGAAATGTTTGAAGCT GCACGCCGTATAATGAGCTGGCTGGGCGAATGTGCTAAGGTTATTGCTTCAGAAAACAAACCAGTAAGGTGGACAACTCCTCTCGGGCTTCCTGTTGTGC AACCATATAGGAATTCAGGGCGCCATCTTATCAAGACTTCCCTCCAGGTCTTAACATTGCAACGGGAGACCGAGAAGGTCATGGTCAAGAAGCAAAGAAC AGCATTCCCACCTAATTTTGTGCACTCTCTGGATGGTTCACATATGATGATGACTGCTATTGCCTGCCGAAGAGAAGGCTTGAACTTTGCAGGTGTCCAC GATTCGTTCTGGACGCATGCATGTGATGTGGATCAACTGAACATGATACTAAGAGAGAAATTCGTTGAACTCTACGACGCCCCCATACTAGAAGATTTAC TGGAGAGCTTTAAGGAATCATTTCCAACGCTAACATTTCCCCCTCTGCCCGAAAGAGGAGATTTCGAGCTAAGCGAGGTTTTGCAGTCTGATTATTTTTT CAACTAG
AA sequence Show only first row Show all	>Lus10031952 pacid=23161083 polypeptide=Lus10031952 locus=Lus10031952.g ID=Lus10031952.BGIv1.0 annot-version=v1.0 MSNPTPPLLSAREFHHFLFFNTTPSVLSPFPPTATQPISRIHRKTTYASLGHTFCPKSTPEVLTRASVATGAVTSPPAEEAEEEEEEDSAFFAAEVKELL MELRKEQREVPARKRLERIAPGMEWKKYEELKRRQVKIETEAWEKAAAEYRQLLKEMCENKLAPSLPYMKSLFLGWFEPFRDTILKEQQLMRQGKCRASY APYFDLLPADMMSVITMHKLMELLMTVGEHGSVKVVNAAIAVGDAIEQEIRIKNFLDKTKKKRAAKAEKVEDGEAAVAAKEQEKMRRKVIELIRKQKLPA VRRMVKGYDESRPWSQEAKAKVGSRVIELLIQTAYVQPPADQICDGPPDIRPAFIHTVITMAKEDKKTGRQCGVIQCDPVVLKGLERSARHMVIPYMPML VPPVKWTKYDKGAYFFLPSYIMRTHGSKQQRETMRRASRTQLQPVFEALDTLGSTNWRINERVLDVVDSMWNSGGSLANLIDREDVPLPEKPDTEDETLL TKWRWELRKAKKENRERHSLRCDTELKLSVAHKMKDEEGFYFPHNIDFRGRAYPMHPHLNHLGSDMSRGVLEFAEGRPLGNSGLRWLKIHLANLFAGGID KLSYEDRISFTENHLYDIFDSADKPLEGQRWWLQAEDPFQCLAACINLTDALRSFTPETYVSHLPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAAEIPA DVYSDIAARVLDIMHEDASKDPTSFPDALLATALLNQVDRKLVKQTVMTSVYGVTYVGARDQIMRKLKERGTELGDTKIFAASCYAAKVTLIALEEMFEA ARRIMSWLGECAKVIASENKPVRWTTPLGLPVVQPYRNSGRHLIKTSLQVLTLQRETEKVMVKKQRTAFPPNFVHSLDGSHMMMTAIACRREGLNFAGVH DSFWTHACDVDQLNMILREKFVELYDAPILEDLLESFKESFPTLTFPPLPERGDFELSEVLQSDYFFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15700			DNA/RNA polymerases superfamil...		Lus10031952 [exp]	0	1
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	1.0	0.9856
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10001060 [exp]	1.4	0.9646
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009671 [exp]	1.7	0.9643
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Lus10039467 [exp]	2.0	0.9639
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Lus10031160 [exp]	3.2	0.9591
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10028505 [exp]	3.5	0.9555
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10041566 [exp]	4.0	0.9535
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030259 [exp]	6.5	0.9300
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10010771 [exp]	7.3	0.9262
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10008475 [exp]	7.5	0.9408

Compare expression of checked genes

Lus10031952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.