Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30380 540 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G14390 424 / 2e-148 alpha/beta-Hydrolases superfamily protein (.1) AT4G24760 423 / 5e-148 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 419 / 2e-146 alpha/beta-Hydrolases superfamily protein (.1) AT1G13610 365 / 3e-125 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G38220 360 / 1e-123 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G66900 342 / 2e-117 alpha/beta-Hydrolases superfamily protein (.1) AT4G31020 339 / 7e-116 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G24320 338 / 8e-116 alpha/beta-Hydrolases superfamily protein (.1) AT1G32190 315 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035148 [exp] 746 / 0 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10022307 [exp] 417 / 4e-145 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10042075 [exp] 410 / 9e-143 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10036842 [exp] 404 / 6e-140 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10018081 [exp] 414 / 3e-137 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10017617 [exp] 356 / 9e-122 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10000544 [exp] 356 / 2e-121 AT3G01690 488 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10040038 [exp] 350 / 4e-120 AT4G31020 491 / 3e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033575 [exp] 349 / 5e-119 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G102500 [exp] 575 / 0 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G112300 [exp] 570 / 0 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G112600 [exp] 501 / 1e-178 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G136900 [exp] 500 / 3e-178 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G340000 [exp] 447 / 4e-157 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G087100 [exp] 433 / 5e-152 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G090800 [exp] 429 / 2e-150 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G117633 [exp] 385 / 4e-133 AT5G38220 468 / 9e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.004G097300 [exp] 379 / 4e-131 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.018G111400 [exp] 345 / 3e-118 AT4G31020 447 / 4e-160 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10031953 pacid=23161243 polypeptide=Lus10031953 locus=Lus10031953.g ID=Lus10031953.BGIv1.0 annot-version=v1.0 ATGGGGGCGATGACGTCGACGATGGCGGCGAAATTCGCGTTTTTTCCGCCGACCCCGCCATCTTACAAGGTAGAGGTAGACGAGCCGAGTAGGAAGCTCA AGATGGTTGGGCCTGGGATCGGCGTCAGGGGAAATGCCGATGTGTGGAAGCTGGATACGAAGAGAGGGAATCAGGTGGTGGCGGTTTATTTTAAGAACCC TGCTGCTTCGCTTACTCTTCTCTACTCTCATGGTAATGCTGCGGATCTGGGACAGATGTTCGATTTGTTCAGTGAGCTGAGTTTGCATCTCCGAGTCAAC CTTATGGGGTATGATTACAGCGGGTATGGAAAGTCTACTGGAAAGCCGAGCGAGCAAAATACGTATGCTGATGTAGAAGCTGTATATAGATGCCTTGAAG AGAAATATGGGGCGAAGCAAGAAGATGTCATTTTGTATGGACAATCAGTTGGTAGTGGACCTACACTAGATTTGGCAATCCAGTTGCCAAGATTAAGGGC TGTTGTTCTCCATAGCCCGATTGCATCTGGTCTCCGCGTGATGTATCCTGTTAAACGAACCTATTGGTTCGACATATATAAGAACATTGATAAAATTCCA TTCGTAAGATGTCCGGTGCTGGTGATTCACGGAACTTCTGATGATGTTGTAGATTGGTCCCATGGCAAGCAGCTGTGGGAACTCTGTCAAGAGAAATATG AACCGTTGTGGGTGAAGGAAGGGAATCATTGTGATCTGGAGATGCATCCACAGTACATCAAGCATCTCAAAAAGTTCATATCAGCCATTGAGAAATCCCA TTCGAGGAATGACTCCGTTCCATCCACTCAACAGCCAGAGATCCCTAGGAAGAGCACAGACGTTAGAGAACCTTCGAGATCAAGCATTGACCAGCGGGAT AAGGTTAAGCCGAGTACGGAGCAGAGAGCAAAGACTAGACCAAGCACAGATCGGAGAGACAAATCCAGAGGCAGCATTGACCGGAGAGAAAAATCAAGGA AAAGCATGGACCGGCCAGAGAAAGAAAACCTTACTGTTGAGCAGCACGATAAAGCAAGGAACAGCATTGATCGGTTCGGTGGGATGATACGTTCAGTTGG ATTATGCAACATTGATTGTTTCAAGCCCACAGCTACAGCCCTCTAA
AA sequence Show only first row Show all	>Lus10031953 pacid=23161243 polypeptide=Lus10031953 locus=Lus10031953.g ID=Lus10031953.BGIv1.0 annot-version=v1.0 MGAMTSTMAAKFAFFPPTPPSYKVEVDEPSRKLKMVGPGIGVRGNADVWKLDTKRGNQVVAVYFKNPAASLTLLYSHGNAADLGQMFDLFSELSLHLRVN LMGYDYSGYGKSTGKPSEQNTYADVEAVYRCLEEKYGAKQEDVILYGQSVGSGPTLDLAIQLPRLRAVVLHSPIASGLRVMYPVKRTYWFDIYKNIDKIP FVRCPVLVIHGTSDDVVDWSHGKQLWELCQEKYEPLWVKEGNHCDLEMHPQYIKHLKKFISAIEKSHSRNDSVPSTQQPEIPRKSTDVREPSRSSIDQRD KVKPSTEQRAKTRPSTDRRDKSRGSIDRREKSRKSMDRPEKENLTVEQHDKARNSIDRFGGMIRSVGLCNIDCFKPTATAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G30380			alpha/beta-Hydrolases superfam...		Lus10031953 [exp]	0	1
AT4G20930			6-phosphogluconate dehydrogena...		Lus10023258 [exp]	7.0	0.9343
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Lus10013175 [exp]	10.4	0.9113
AT2G44420			protein N-terminal asparagine ...		Lus10020880 [exp]	12.6	0.9341
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10030571 [exp]	17.2	0.9236
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10004026 [exp]	18.4	0.9260
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Lus10036509 [exp]	19.0	0.9140
AT1G56140			Leucine-rich repeat transmembr...		Lus10031401 [exp]	20.3	0.9328
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022190 [exp]	20.9	0.9325
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10037085 [exp]	25.5	0.9282
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10009916 [exp]	25.5	0.9160

Compare expression of checked genes

Lus10031953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.