Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031954 pacid=23161208 polypeptide=Lus10031954 locus=Lus10031954.g ID=Lus10031954.BGIv1.0 annot-version=v1.0 ATGGACTCTAGGCCGGACGAATCCTTCCGACACGCTTCCTCCAGTTCAGCCGCCGTCTTTCTAAGGGAGCTGGATGAGAAGGCCAGAATCAAACAGGAGA TCATCGCAGAGCAGAAATCGCGGTTGAGAGGGTTGCAGGCAGAAGCTGAGATGAATGAAATGAAACCATTTCCAGCAACTCGTCGCCCAGTTCCTGGTCA TAGCCGCCGCATCCTACAGACCTTTAGGGACATTATATATTGTCTATCTACGTTACTTGGCATTTTCGGGAACGGTGAAATGGTGATTGACTCCACATAC ACCATCTGA
AA sequence Show only first row Show all	>Lus10031954 pacid=23161208 polypeptide=Lus10031954 locus=Lus10031954.g ID=Lus10031954.BGIv1.0 annot-version=v1.0 MDSRPDESFRHASSSSAAVFLRELDEKARIKQEIIAEQKSRLRGLQAEAEMNEMKPFPATRRPVPGHSRRILQTFRDIIYCLSTLLGIFGNGEMVIDSTY TI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10031954 [exp]	0	1
AT3G24060			Plant self-incompatibility pro...		Lus10017719 [exp]	10.9	0.6342
AT4G05130		ATENT4	equilibrative nucleoside trans...		Lus10002590 [exp]	12.6	0.6305
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10003551 [exp]	21.5	0.6021
AT5G25940			early nodulin-related (.1)		Lus10033027 [exp]	25.2	0.6137
AT2G26390			Serine protease inhibitor (SER...		Lus10039336 [exp]	27.3	0.6030
AT5G27700			Ribosomal protein S21e (.1)		Lus10010971 [exp]	29.2	0.6094
AT5G54010			UDP-Glycosyltransferase superf...		Lus10008453 [exp]	33.6	0.6017
AT1G60410			F-box family protein (.1)		Lus10020292 [exp]	35.5	0.5646
AT1G76810			eukaryotic translation initiat...		Lus10023474 [exp]	36.4	0.5997
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10023022 [exp]	41.2	0.5976

Compare expression of checked genes

Lus10031954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.