Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15710 714 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30950 119 / 2e-29 UFO UNUSUAL FLORAL ORGANS, F-box family protein (.1) AT1G27340 113 / 4e-27 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G61590 99 / 3e-22 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G43190 70 / 7e-13 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G76920 67 / 6e-12 F-box family protein (.1) AT4G33160 67 / 6e-12 F-box family protein (.1) AT5G49610 60 / 1e-09 F-box family protein (.1) AT3G57580 60 / 1e-09 F-box and associated interaction domains-containing protein (.1) AT3G17500 57 / 2e-08 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035147 [exp] 877 / 0 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10015775 [exp] 132 / 9e-34 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037030 [exp] 129 / 2e-32 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10010610 [exp] 113 / 1e-27 AT5G43190 327 / 2e-110 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10018690 [exp] 110 / 2e-26 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10007740 [exp] 110 / 4e-26 AT5G43190 292 / 2e-94 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10007855 [exp] 108 / 8e-26 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10007755 [exp] 107 / 2e-25 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10003029 [exp] 104 / 2e-24 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G112400 [exp] 745 / 0 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G102300 [exp] 744 / 0 AT5G15710 744 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G057100 [exp] 125 / 3e-31 AT1G27340 613 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G160900 [exp] 123 / 7e-31 AT1G30950 554 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.003G171300 [exp] 123 / 8e-31 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G074100 [exp] 119 / 2e-29 AT1G30950 528 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.014G016200 [exp] 107 / 2e-25 AT5G43190 277 / 2e-90 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G118700 [exp] 103 / 2e-24 AT5G43190 352 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G166500 [exp] 102 / 1e-23 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.014G093200 [exp] 100 / 8e-23 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10031955 pacid=23161272 polypeptide=Lus10031955 locus=Lus10031955.g ID=Lus10031955.BGIv1.0 annot-version=v1.0 ATGGATGAAATTGGAGAATCATCGGAATCTGCGTCAGCTTTAGCTAGTCCTAGATCGGTGATAACATATGGATACCGCGATGAAGGTTGTTGCCCTAGGC AAGTTTCACCGATTAGGATTGGCGGGTCGAGGAACACCAGCCCCATGGGTCGAGTTGGGTCTAGAAACACCTGCCCTTTGAAGCAGAAAGTAGTCATGAC TAAACCCCGTGGTTTGGATGAAGAGACTGCGACCACCACATTTGGCAAGGCTATTTACTATTGTGATGTTCAGATGGAGGACAACATATGGGCAATGCTG CCCGAAGATCTCTTGAACGAGATCTTAGCTCGAGTTCCGCCGTTCATGATCTTTCGCCTTCGATCGGTTTGCAAGCGGTGGAATTCGATCTTGCAAGACA TCAGCTTTCTCAAATTCCACTCGCAGGTGCCTTCTCACGGACCGTGTCTCTTTGCATTCTGGAAAAACTCGCAGACTCCGCAGTGTTCTGTTCTCAGCTT GCCGTTGAAGACATGGTATCGAATTCCTTTCACGTTCTTACCGCAGTGGGCGGTTTGGTTGGTTGGTTCTTCGGGCGGACTCGTTTGCTTTTCCGGACTC GATGGGTTGACTTTCAAGTCATTGGTTTGCAATCCTTTGACTCAGACATGGAGGACTCTTCCCAGCATGCACAATAATCAGCAGAGACAGTTGATATTGG TGGTCGATCGTTCGGACCGGTCGTTCAAAGTGATAGCTACCAGCGATGTTTATGGCGATAAATCGTTGCCTACCGAAGTGTACGATTCGAAACTCGACAG ATGGGTTGTTCATCAGATTATGCCTGCCGTTAATCTATGCTCCTCGAAGATGGCGTATTGCGACTCGAGATTATACCTCGAGACTCTTTCTCCGCTCGGT TTGATGATGTATAAGCTCGACACGGGTTACTGGGAGCATATTCCTGCGAAGTTTCCACGGTCTCTGTTGGATGGATACTTGGTGGCTGGAACCCAGAAGC GGTTGTTTTTGGTGGGGAGAATCGGCCTATATAGTACGCTTCAGAGTATGAGGATTTGGGAGTTGGATCATGCGAAGAACTTGTGGCTAGAGATTAGTAG AATGCCACCAAAGTATTTCAGGACGTTGCTGAGGCTGTCGGCTGATCGGTTCGAGTGCTTTGGACAGGATAACTTGATATGTTTCACATCTAGGAACCAA GGGAAGGGTTTGTTGTATGATGTGGATAAGAAGGTGTTGTCGTGGATCGGAGGATGTCCTCTTGAATCATATAACAGCCAGGTGTGCTTCTATGAGCCTA GATTTGATGCTTCAATCTATTGA
AA sequence Show only first row Show all	>Lus10031955 pacid=23161272 polypeptide=Lus10031955 locus=Lus10031955.g ID=Lus10031955.BGIv1.0 annot-version=v1.0 MDEIGESSESASALASPRSVITYGYRDEGCCPRQVSPIRIGGSRNTSPMGRVGSRNTCPLKQKVVMTKPRGLDEETATTTFGKAIYYCDVQMEDNIWAML PEDLLNEILARVPPFMIFRLRSVCKRWNSILQDISFLKFHSQVPSHGPCLFAFWKNSQTPQCSVLSLPLKTWYRIPFTFLPQWAVWLVGSSGGLVCFSGL DGLTFKSLVCNPLTQTWRTLPSMHNNQQRQLILVVDRSDRSFKVIATSDVYGDKSLPTEVYDSKLDRWVVHQIMPAVNLCSSKMAYCDSRLYLETLSPLG LMMYKLDTGYWEHIPAKFPRSLLDGYLVAGTQKRLFLVGRIGLYSTLQSMRIWELDHAKNLWLEISRMPPKYFRTLLRLSADRFECFGQDNLICFTSRNQ GKGLLYDVDKKVLSWIGGCPLESYNSQVCFYEPRFDASIY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15710			Galactose oxidase/kelch repeat...		Lus10031955 [exp]	0	1
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10038221 [exp]	2.0	0.8360
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017141 [exp]	4.9	0.8337
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10029267 [exp]	5.5	0.8207
AT5G47850		CCR4	CRINKLY4 related 4 (.1)		Lus10029170 [exp]	6.3	0.8022
AT5G51040			unknown protein		Lus10043024 [exp]	11.4	0.7990
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10025680 [exp]	12.4	0.7936
AT2G32070			Polynucleotidyl transferase, r...		Lus10036291 [exp]	15.9	0.7516
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009925 [exp]	17.3	0.7946
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10005201 [exp]	17.5	0.7638
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10035764 [exp]	17.9	0.7807

Compare expression of checked genes

Lus10031955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.