Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29400 577 / 0 ATEXO70E1 exocyst subunit exo70 family protein E1 (.1) AT5G61010 447 / 3e-149 ATEXO70E2 exocyst subunit exo70 family protein E2 (.1.2) AT5G50380 404 / 5e-132 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT3G14090 371 / 8e-120 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G72470 363 / 2e-116 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT1G54090 349 / 1e-111 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G58430 310 / 2e-96 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT1G07000 291 / 2e-89 ATEXO70B2 exocyst subunit exo70 family protein B2 (.1) AT1G07725 272 / 3e-82 ATEXO70H6 exocyst subunit exo70 family protein H6 (.1) AT2G28640 265 / 1e-79 ATEXO70H5 exocyst subunit exo70 family protein H5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035146 [exp] 1283 / 0 AT3G29400 579 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10016764 [exp] 410 / 3e-134 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10008126 [exp] 388 / 6e-126 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10022459 [exp] 382 / 2e-124 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10013163 [exp] 369 / 4e-121 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10004917 [exp] 295 / 2e-90 AT5G59730 532 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10041536 [exp] 283 / 1e-84 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1) Lus10005436 [exp] 279 / 2e-84 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10015221 [exp] 279 / 2e-84 AT2G39380 533 / 0.0 exocyst subunit exo70 family protein H2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G093966 [exp] 868 / 0 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1) Potri.015G058200 [exp] 545 / 0 AT5G61010 585 / 0.0 exocyst subunit exo70 family protein E2 (.1.2) Potri.017G093700 [exp] 527 / 7e-180 AT3G29400 404 / 4e-132 exocyst subunit exo70 family protein E1 (.1) Potri.012G097100 [exp] 421 / 1e-138 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.015G094800 [exp] 416 / 5e-137 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.001G166400 [exp] 381 / 2e-123 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 375 / 3e-121 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.017G093833 [exp] 337 / 2e-105 AT3G29400 318 / 1e-98 exocyst subunit exo70 family protein E1 (.1) Potri.013G152900 [exp] 319 / 7e-100 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.019G124000 [exp] 310 / 4e-96 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10031956 pacid=23161244 polypeptide=Lus10031956 locus=Lus10031956.g ID=Lus10031956.BGIv1.0 annot-version=v1.0 ATGGAGGCATTTAATTCCCAAATCCCGCAACTTGAAGGTGAAGAGAACTTAATAGCAGCCGCCAGGCAAATCGTGAGGGCTTTAGGATCTCAAAAGAATC TCACAGATGATGCAAAGAAAGTCTTGGCTGACCTTGGAACCCAATTGTCCAACATAACTGTAATCAGCGAGAACAACGATCATGCTGACAACGACGATCA AGTACAAGAAGAAGAAGGAGATATCAGCAAGCTCGAAGCACATTTGAATACGATCCAGCAAAAGATCTCGAATTGGGAGTCAGACCACTCTATGATATGG GACTTAGGTCCAGATGAAGCTGGTGAGTATCTAAACGCCACTCTTGATGCCCAGAAATTGACTGCAAGATTGGAGGACTTGTCCAATGGCGGCTCGGATG GAAATGGTGATTTGCTCCGCAGGGCTTATGATGTGCTTCAGATGGCGATGGCGAGGCTCGAGCAAGAGTTCACACACTTGCTTGTACAGAACCAGATGCC GTTTGATCGAGAACTAGCTTCTTTCCGTTCGAGCGAAGACGATGGGATCGATTTCAGCTCGGTTGTCTCGGCTGGGGACGACTCGGGTCGTTTCGACGAT CCGATTGCTAGAGATAGTGTTAGCAAGACATGGGATCAGGAAAACAACATCATGGACTTGGTTCATCCTGATTCGGTCCCCGATCTTAGGGACATTGCGA ATTTGATGTTTGTTTCCGGATACGGTCACGAATGTTCTCAAGCGTATATAACAGTCCGGAGAGACGCCATGGACGAGTGTCTGTTCAACCTCGATATGGA GCGGCTAAGCATCGAGGATGTCTTAAGGCTGGAATGGGGGAGTTTGAATTCAAAGATCAAGAAATGGGTTCGAGCTTTGAAAGTGTTCGTCCGAGTCTAT CTGGCGAGCGAGAGGTTCCTTAGCGAGCAAGTATTCGGACAGCTCGAGAATACAACGTATTCTGATTGTTTTATCGAGGCTTCAAAGGGGTCGATGCTCC AGCTGTTGAATTTCGGGGAAGCGATATCGATCGGTCCTCATAAACCGGAGAAGCTGTTTCCTATTCTGGACATGTACGAGATCGTTTCGGATGTGATTCC GGATATCAATTCATTGTATTCAAGCGATGCTGGTACCTGCGTGAGAATCGATTGCCACGAGCTCCAAAGGAGATTGGGGGAGTCGGTCAGGGCTGCGTTT CTCGAGTTTCAGAATGCCATTGCAACGAGCACTTCCACGAACCCTTTCGCTGGCGGAGGGATTCATCACCTGACTCGCTACGTTATGAACTACGTAAACA TGTTGACCGATTACCAGGACTCGTTGAATTTCCTGTTGAAAGATCAGGATCAGGATCGAGTTTTACTCGATCATCATCCGGTCGTTATGTCTCCCGATAT AAGTCCATCCCGGGAGGAAGACAACGCAACGACCGTGGAATCATCATCTCCTAGTGACGATGTTTCGACACTGGCTCTACATTTTCGATCGGTTACTTCA ATTCTCGAATGCAACCTGGACTCGAAGGCCAGGCTATACCGTGACGTTTCGTTACAGCATGTGTTCATGATGAACAATATCCACTACATGGCACAGAAGG TGAAGAATAATGCGGCGTTGAGGCACATTTTCGGAGACGAGTGGATTAGGAAGAGGAACTGGAAGTTCCAGCAGCACGAGATTTACTACGAGAGGGCGAC GTGGAGTTCGATACTGTCGTTGCTGAGGGACGAAGGGAACTCGCATCCCAACGCGATTTCAAAGTCTCAGCTGAGGGACATGATCAGGAACTTCTACGCG GCGTTCGAGGATGTTTACAGAACGCAGACTTCGTGGCTTATCCCAGATGGTCAGCTGCGAGATGATTTACGAATTTCGACATCGTTGAAGGTGATTCAGG CTTACAGGAATTTTGTTGGGAGGCATACCAATAGCATTGGTGACAGGCATATAAAGTACAGTGCTGATGATTTGGAGAACTATTTGATGGATCTGTTTGA AGGGTCTCAGAAGTCATTGCAGAACTCTCACAGGAGATGA
AA sequence Show only first row Show all	>Lus10031956 pacid=23161244 polypeptide=Lus10031956 locus=Lus10031956.g ID=Lus10031956.BGIv1.0 annot-version=v1.0 MEAFNSQIPQLEGEENLIAAARQIVRALGSQKNLTDDAKKVLADLGTQLSNITVISENNDHADNDDQVQEEEGDISKLEAHLNTIQQKISNWESDHSMIW DLGPDEAGEYLNATLDAQKLTARLEDLSNGGSDGNGDLLRRAYDVLQMAMARLEQEFTHLLVQNQMPFDRELASFRSSEDDGIDFSSVVSAGDDSGRFDD PIARDSVSKTWDQENNIMDLVHPDSVPDLRDIANLMFVSGYGHECSQAYITVRRDAMDECLFNLDMERLSIEDVLRLEWGSLNSKIKKWVRALKVFVRVY LASERFLSEQVFGQLENTTYSDCFIEASKGSMLQLLNFGEAISIGPHKPEKLFPILDMYEIVSDVIPDINSLYSSDAGTCVRIDCHELQRRLGESVRAAF LEFQNAIATSTSTNPFAGGGIHHLTRYVMNYVNMLTDYQDSLNFLLKDQDQDRVLLDHHPVVMSPDISPSREEDNATTVESSSPSDDVSTLALHFRSVTS ILECNLDSKARLYRDVSLQHVFMMNNIHYMAQKVKNNAALRHIFGDEWIRKRNWKFQQHEIYYERATWSSILSLLRDEGNSHPNAISKSQLRDMIRNFYA AFEDVYRTQTSWLIPDGQLRDDLRISTSLKVIQAYRNFVGRHTNSIGDRHIKYSADDLENYLMDLFEGSQKSLQNSHRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Lus10031956 [exp]	0	1
AT3G48880			RNI-like superfamily protein (...		Lus10027450 [exp]	6.9	0.8121
AT1G48840			Plant protein of unknown funct...		Lus10020973 [exp]	8.8	0.8545
AT3G58030			RING/U-box superfamily protein...		Lus10016255 [exp]	10.4	0.8371
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Lus10010505 [exp]	10.8	0.8592
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10030312 [exp]	13.0	0.8388
AT2G07180			Protein kinase superfamily pro...		Lus10040588 [exp]	13.1	0.7944
AT1G47710			Serine protease inhibitor (SER...		Lus10002792 [exp]	14.5	0.8142
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10034177 [exp]	16.1	0.8016
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10013216 [exp]	17.1	0.8116
AT3G14910			unknown protein		Lus10011169 [exp]	19.0	0.8350

Compare expression of checked genes

Lus10031956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.