Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17190 129 / 2e-39 unknown protein AT3G03160 126 / 3e-38 unknown protein AT1G48440 57 / 4e-11 B-cell receptor-associated 31-like (.1) AT3G17780 49 / 6e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034347 [exp] 132 / 2e-40 AT5G17190 246 / 5e-86 unknown protein Lus10005110 [exp] 130 / 5e-40 AT5G17190 244 / 6e-85 unknown protein Lus10040126 [exp] 44 / 2e-06 AT1G48440 191 / 3e-64 B-cell receptor-associated 31-like (.1) Lus10001080 [exp] 44 / 3e-06 AT1G48440 190 / 7e-64 B-cell receptor-associated 31-like (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G035400 [exp] 70 / 3e-16 AT3G03160 142 / 1e-44 unknown protein Potri.012G042700 [exp] 63 / 2e-13 AT1G48440 172 / 2e-56 B-cell receptor-associated 31-like (.1) Potri.015G030801 [exp] 55 / 3e-10 AT1G48440 184 / 4e-61 B-cell receptor-associated 31-like (.1) Potri.008G133600 [exp] 0 / 1 AT5G17190 244 / 7e-85 unknown protein Potri.010G108000 [exp] 0 / 1 AT5G17190 245 / 1e-85 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031957 pacid=23161147 polypeptide=Lus10031957 locus=Lus10031957.g ID=Lus10031957.BGIv1.0 annot-version=v1.0 ATGGCGCTCGAGTGGGTCGTGCTTGGATACGCAGCAGGGGCGGAGGCGATCATGGTCCTCCTCCTGACGATTCCGGGTCTCGACAGTCTCCGGAAGGGAC TGATCGCCGTGACTCGCAACCTCCTCAAGCCCTTCTTATCGGTGGTTCCGTTCTGCCTGTTCCTCTTGATGGACATCTACTGGAAGTACGAGACCCGGCC GTCTTGCGAGGGCGAATCCTGCAGCCCCAGCGAGCAGCTCCGTCAGTTCTATCATGAAGAGCCAGAGGAGTGCGTTGCTGATAGCGGCGGCACTGATCTT CTACTGGCTGCTTTACTCCGTCACCAATCTGGTCGTCAAGATCCAGATGTTGAATCAGCGCATCGAGAGGCTCAAGAACAAGGAGTGAGGCGGAATCATT GA
AA sequence Show only first row Show all	>Lus10031957 pacid=23161147 polypeptide=Lus10031957 locus=Lus10031957.g ID=Lus10031957.BGIv1.0 annot-version=v1.0 MALEWVVLGYAAGAEAIMVLLLTIPGLDSLRKGLIAVTRNLLKPFLSVVPFCLFLLMDIYWKYETRPSCEGESCSPSEQLRQFYHEEPEECVADSGGTDL LLAALLRHQSGRQDPDVESAHREAQEQGVRRNH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17190			unknown protein		Lus10031957 [exp]	0	1
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10041819 [exp]	2.6	0.8628
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10028370 [exp]	4.7	0.8615
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10040032 [exp]	6.9	0.8596
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10011042 [exp]	7.7	0.8508
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10033625 [exp]	8.4	0.8356
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Lus10032349 [exp]	9.6	0.8584
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10034612 [exp]	9.7	0.8222
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031202 [exp]	11.6	0.8142
AT5G08139			RING/U-box superfamily protein...		Lus10023235 [exp]	12.8	0.8306
AT1G80400			RING/U-box superfamily protein...		Lus10011475 [exp]	14.1	0.8218

Compare expression of checked genes

Lus10031957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.