Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68390 379 / 7e-129 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 308 / 1e-101 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 300 / 5e-98 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G68380 299 / 7e-98 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10280 297 / 6e-97 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 294 / 3e-96 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 287 / 2e-93 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 285 / 3e-92 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10880 283 / 1e-88 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 265 / 2e-84 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035145 [exp] 580 / 0 AT1G68390 393 / 6e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10034349 [exp] 547 / 0 AT1G68390 387 / 3e-131 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036610 [exp] 350 / 4e-117 AT1G68390 404 / 3e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035828 [exp] 344 / 8e-115 AT1G68390 401 / 7e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002989 [exp] 301 / 2e-98 AT1G10280 525 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10024468 [exp] 300 / 4e-98 AT1G10280 524 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 297 / 7e-97 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 297 / 7e-97 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10040972 [exp] 297 / 9e-97 AT1G10280 529 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G121800 [exp] 422 / 5e-146 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 375 / 1e-127 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 325 / 8e-108 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 312 / 9e-103 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 307 / 2e-101 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 306 / 5e-101 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 304 / 6e-100 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 302 / 4e-99 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 294 / 4e-96 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 291 / 3e-95 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10031958 pacid=23161098 polypeptide=Lus10031958 locus=Lus10031958.g ID=Lus10031958.BGIv1.0 annot-version=v1.0 ATGAAGAGGCATCATCATCACCATCATCCGAAAGTGACGTCATCATCGTCGTCGTCATGGTTTTCGAAACGGCATCTGATCGACACATTCTCCAGTTTCT TCCTATTCTCCTGCGGCCTAGCCGCCGGCGTCATCCTTAACTCCTATCTCCGAAACACCTCCTCCTTCCTCAATCTCCACGTCACCAATTTCTCCATTTC CCCTTCCCCCAACAATTCACCTCCTCCTAATTCCCCTTCTCCGGAAACGGCGCCGTTTCAGCCAGCCCAAACGAGGCCGTTTCAGCCACCAATCACACCG GCAATCCCCGTGATCCAGGACGACGTCGTTCACGATCAGGAAAAAATTGTAGAAGATGATCGCCATCACGATGACGTGGACGGTGCGGGTATATTCCGCC CGACTCCGATTCGGGTCGGGTTGACGGAGTATCTAAAAGTGCCGGAAGTGAGGCACGACATGAAAGAAGAGGAGCTGCTGTGGAGGGCGTCGATGGTGCC GAAATTACGGAACTACCCTTTTCCGAGGGTGCCGAAAGTGGCGTTTATGTTCCTGACGAAAGGTCCGATACTTCTGCACCAAATATGGGAGATGTTCTTC AAAGGAGTGGACCAAGGGCTTTACTCGATCTACATCCATTCCAATCCTGCTTACGTGGAGCCGCCTGACGAGAGTCCCATCTTCCGCGGCCGTCGGATTC CCAGCAAGATAGTAACATGGGGGAAAGTGAACATGATGGAGGCCGAAAGGCGGCTGCTAGCAAACGCACTCCTCGACATCTCAAACCAACGATTCGTCCT CCTCTCCGAATCATGCATCCCACTCTTCAACTTCTCAACGGTCTACTCTTACCTCATCAACTCCCAACAGGTCTACGTGGAGGCCTACCACTCCGTAGCG GCTCGAAACCGTTACACCCACGACATGCTACCCGAGGTCAAGCTGTCACACTGGCGGAAAGGGTCCCAGTGGTTTGAGATCGATAGAGAACTCGCGATCG AGGTGGTCTCGGACAGGAAGTACTTCACAAAGTTCCAGGACCACTGCAGGGACATGCCCTGCTACGTGGACGAACACTACCTCCCGACCTACTTCAGCAT CAAGCACTGGCGTAGGAACTCGAACCGGAGCCTGACGTGGGTGGATTGGTCGAACGGCGGGATCCACCCAAACCGGTACGTCAGGCAGGAGGTGACCGTG CAGTTTTTGGAGAAGTTGAGGAGTGGAGGGAGGTGTTTGTATAATGGGAAAAGTACGAGTACTTGTCATTTGTTTGGGAGGAAGTTTCTGACCACTTCTT TGGTTAGGCTGTTGAGATATGCCCCTAGAGTCATGCACTTTAATCCCTAG
AA sequence Show only first row Show all	>Lus10031958 pacid=23161098 polypeptide=Lus10031958 locus=Lus10031958.g ID=Lus10031958.BGIv1.0 annot-version=v1.0 MKRHHHHHHPKVTSSSSSSWFSKRHLIDTFSSFFLFSCGLAAGVILNSYLRNTSSFLNLHVTNFSISPSPNNSPPPNSPSPETAPFQPAQTRPFQPPITP AIPVIQDDVVHDQEKIVEDDRHHDDVDGAGIFRPTPIRVGLTEYLKVPEVRHDMKEEELLWRASMVPKLRNYPFPRVPKVAFMFLTKGPILLHQIWEMFF KGVDQGLYSIYIHSNPAYVEPPDESPIFRGRRIPSKIVTWGKVNMMEAERRLLANALLDISNQRFVLLSESCIPLFNFSTVYSYLINSQQVYVEAYHSVA ARNRYTHDMLPEVKLSHWRKGSQWFEIDRELAIEVVSDRKYFTKFQDHCRDMPCYVDEHYLPTYFSIKHWRRNSNRSLTWVDWSNGGIHPNRYVRQEVTV QFLEKLRSGGRCLYNGKSTSTCHLFGRKFLTTSLVRLLRYAPRVMHFNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10031958 [exp]	0	1
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Lus10031778 [exp]	1.4	0.9577
AT3G07070			Protein kinase superfamily pro...		Lus10011866 [exp]	2.4	0.9629
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10022729 [exp]	3.9	0.9515
					Lus10027053 [exp]	4.2	0.9454
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036457 [exp]	6.3	0.9457
AT5G26594		ARR24	response regulator 24 (.1)		Lus10004775 [exp]	7.1	0.9457
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10000206 [exp]	7.7	0.9282
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10026765 [exp]	7.7	0.9457
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10019853 [exp]	8.4	0.9457
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10039329 [exp]	8.9	0.9457

Compare expression of checked genes

Lus10031958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.