Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68260 221 / 6e-75 Thioesterase superfamily protein (.1) AT1G68280 208 / 1e-69 Thioesterase superfamily protein (.1) AT1G35290 201 / 8e-67 Thioesterase superfamily protein (.1) AT1G35250 195 / 1e-64 Thioesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035143 [exp] 284 / 4e-99 AT1G68260 239 / 8e-81 Thioesterase superfamily protein (.1) Lus10031948 [exp] 236 / 2e-80 AT1G68260 201 / 8e-66 Thioesterase superfamily protein (.1) Lus10035152 [exp] 229 / 1e-77 AT1G68260 200 / 3e-65 Thioesterase superfamily protein (.1) Lus10031936 [exp] 56 / 6e-11 AT1G68260 50 / 2e-08 Thioesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G123102 [exp] 235 / 8e-80 AT1G68260 237 / 6e-80 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF03061 [flax] [poplar] 4HBT Thioesterase superfamily
Representative CDS sequence Show only first row Show all	>Lus10031959 pacid=23161205 polypeptide=Lus10031959 locus=Lus10031959.g ID=Lus10031959.BGIv1.0 annot-version=v1.0 ATGACTGGGTTCCATGACATAGAAATGAAAGTACGAGAATACGAGCTTGATCAATATGGCGTAGTTAACAATGCTGTTTACGCCAGCTACTGTCAACACG GTCGTCATGAACTCCTAGAGAGCATTGGTCTTAGTGCAGATGCTGTTGCTCGTACAGGTGACGCATTGGCACTGTCGGAGTTATCTCTCAAATTTCTTGC CCCTCTAAGAAGTGGAGACAGGTTTACTGTAAGAGTGCGACTCTCCGACTCCTCTGCAGCCCGCTTATACTTTGAGCATTTCATCTTCAAGTTGCCAAAC AACGAGCCTGTTCTGGAAGCAAAAGCTACAGCTGTTTGGCTTGACAAACACTATCGTCCAGTTCGAATCCCTGCAGATTTTAGTTCCAAACTAGTTCAGT TTATCCGTCATGAGGACTCTAATGTACCTCCCACAAATTGA
AA sequence Show only first row Show all	>Lus10031959 pacid=23161205 polypeptide=Lus10031959 locus=Lus10031959.g ID=Lus10031959.BGIv1.0 annot-version=v1.0 MTGFHDIEMKVREYELDQYGVVNNAVYASYCQHGRHELLESIGLSADAVARTGDALALSELSLKFLAPLRSGDRFTVRVRLSDSSAARLYFEHFIFKLPN NEPVLEAKATAVWLDKHYRPVRIPADFSSKLVQFIRHEDSNVPPTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68260			Thioesterase superfamily prote...		Lus10031959 [exp]	0	1
AT2G20650			RING/U-box superfamily protein...		Lus10018613 [exp]	3.3	0.9454
AT2G20650			RING/U-box superfamily protein...		Lus10039848 [exp]	6.9	0.9435
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10007497 [exp]	8.6	0.9435
AT5G53340			Galactosyltransferase family p...		Lus10033935 [exp]	11.6	0.9300
AT4G02900			ERD (early-responsive to dehyd...		Lus10028000 [exp]	12.3	0.9429
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10013208 [exp]	12.8	0.9150
AT5G45370			nodulin MtN21 /EamA-like trans...		Lus10037284 [exp]	13.0	0.9250
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10039569 [exp]	14.2	0.8674
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Lus10028752 [exp]	14.7	0.9049
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Lus10033993 [exp]	15.7	0.9010

Compare expression of checked genes

Lus10031959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.