Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54340 273 / 2e-93 MADS AP3, ATAP3 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) AT5G20240 124 / 2e-35 MADS PI, PISTILLATA PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) AT5G60910 122 / 4e-34 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT2G45660 117 / 2e-32 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT2G45650 117 / 3e-32 MADS AGL6 AGAMOUS-like 6 (.1) AT5G51870 113 / 5e-31 MADS AGL71 AGAMOUS-like 71 (.1.2.3) AT5G23260 114 / 6e-31 MADS ABS, TT16, AGL32 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) AT4G18960 113 / 1e-30 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT5G62165 112 / 1e-30 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) AT3G58780 112 / 2e-30 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010630 [exp] 445 / 3e-161 AT3G54340 279 / 1e-95 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Lus10033187 [exp] 434 / 8e-157 AT3G54340 275 / 4e-94 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Lus10029719 [exp] 129 / 1e-36 AT5G20240 221 / 3e-73 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Lus10026678 [exp] 125 / 2e-35 AT5G15800 225 / 3e-74 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10004638 [exp] 125 / 3e-35 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10042749 [exp] 121 / 7e-34 AT5G20240 219 / 2e-72 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Lus10010184 [exp] 121 / 1e-33 AT5G23260 218 / 3e-71 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10017388 [exp] 120 / 2e-33 AT5G23260 220 / 4e-72 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10021140 [exp] 117 / 9e-32 AT5G60910 291 / 1e-99 FRUITFULL, AGAMOUS-like 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G118000 [exp] 250 / 3e-84 AT3G54340 226 / 9e-75 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Potri.002G028400 [exp] 247 / 1e-83 AT3G54340 229 / 7e-77 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Potri.007G017000 [exp] 238 / 1e-79 AT3G54340 208 / 1e-67 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Potri.002G079000 [exp] 131 / 7e-38 AT5G20240 238 / 2e-80 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.005G182200 [exp] 129 / 2e-37 AT5G20240 244 / 2e-82 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.002G151700 [exp] 122 / 4e-34 AT2G45660 212 / 8e-70 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.014G074100 [exp] 121 / 1e-33 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.014G074200 [exp] 120 / 1e-33 AT2G45660 242 / 3e-81 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.007G073000 [exp] 120 / 2e-33 AT5G23260 256 / 3e-86 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.010G154100 [exp] 120 / 2e-33 AT1G69120 324 / 7e-113 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10031960 pacid=23161260 polypeptide=Lus10031960 locus=Lus10031960.g ID=Lus10031960.BGIv1.0 annot-version=v1.0 ATGGCGAGGGGGAAGATCCAGATCAAGAGGATCGAGAACTCCACCAATCGCCAGGTCACCTACTCTAAGCGCCGCAACGGTCTCTTCAAGAAGGCCAACG AGCTCACCGTCTTATGTGACGCTAAGGTCTCCATCATCATGTTCTCCAGCACCGACAAGCTTCACGAGTTCATCAGCCCTGCCGCCACAACTAAGGGGAT GTTGGATCAGTACCAGAGAACACTTGGCGTCGATATCTGGACCACGCACTATGAGAAAATGCAAGATCACTTGAAGAAACTGAAAGAAGTGAACAGAGAT CTGCGCAAGGAGATACGGAGAAGGATGGGGGAGTGCTTGAACGATCTGGAGTTGGATCAGATGCGAGCTCTTGACATGGAAATGGATAATGCTGTTAAGA TCATCCGTGAGCGCAAGAATCAGGTGATCTCCAATCAGATTGAGAGGCACAAGAAAAAGGTGAGGAATGTGGAAGCAATACACAGAAACCTTCTGCATGC ATTTCGAGAGAGAGAGGCAGATCCGCACTATGGCTTAGTGGATAATGGAGGGGATTATGAGCCAGCTGTGGTTGGTTTCCCAACAGGGGGTTCTCGAGTT TTCGCTTTAAGGCTAAACCACCTCGATCTCCACACTGCTACTACTGCTACTGGATCCGATCTCACCACTTTCCACTTGCTTGAGTAA
AA sequence Show only first row Show all	>Lus10031960 pacid=23161260 polypeptide=Lus10031960 locus=Lus10031960.g ID=Lus10031960.BGIv1.0 annot-version=v1.0 MARGKIQIKRIENSTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTDKLHEFISPAATTKGMLDQYQRTLGVDIWTTHYEKMQDHLKKLKEVNRD LRKEIRRRMGECLNDLELDQMRALDMEMDNAVKIIRERKNQVISNQIERHKKKVRNVEAIHRNLLHAFREREADPHYGLVDNGGDYEPAVVGFPTGGSRV FALRLNHLDLHTATTATGSDLTTFHLLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10031960 [exp]	0	1
AT3G58780	MADS	AGL1, SHP1	SHATTERPROOF 1, AGAMOUS-like 1...		Lus10029275 [exp]	8.7	0.8689
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10034370 [exp]	12.5	0.8688
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10022898 [exp]	13.3	0.8653
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10034663 [exp]	17.9	0.8640
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Lus10007324 [exp]	19.5	0.8638
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10024928 [exp]	21.9	0.8366
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10003125 [exp]	22.0	0.8591
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	24.0	0.8584
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10004067 [exp]	25.6	0.8584
AT1G17930			Aminotransferase-like, plant m...		Lus10005482 [exp]	27.2	0.8584

Compare expression of checked genes

Lus10031960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.