Plant FIBer expression Database

Lus10031962 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G15680 1127 / 0 ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035141
[exp]
1307 / 0 AT5G15680 3135 / 0.0 ARM repeat superfamily protein (.1)
Lus10019255
[exp]
1082 / 0 AT5G15680 3488 / 0.0 ARM repeat superfamily protein (.1)
Lus10031961
[exp]
525 / 1e-167 AT5G15680 2930 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G106100
[exp]
1142 / 0 AT5G15680 3580 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10031962 pacid=23161080 polypeptide=Lus10031962 locus=Lus10031962.g ID=Lus10031962.BGIv1.0 annot-version=v1.0
ATGTCACCATTACTTGTCCGTGGTTCCCTTGATGGTCCCCTGAGAAATTCTAGCGGGAGCCTGAGCTGGCGAACCGCTGGTGCAACAGGGCGAAGCGTCT
CTGGTCCCCTCAGTCCAATGCCTCCAGAGCTCAATGTAGTCCCAGTGACAGCTGGCCGGTCAGGGCAGCTTCTTCCAGCTTTAGTAAACATGTCAGGTCC
TTTAATGGGAGTTAGAAGTTCAACAGGAAGTTTGCGGAGTCGGAGTCGGCATGTATCTCGAGACAGTGGGGATTACCTCATCGACACTCCAAATTCCGGG
GAAGATGGGTTGCTTCCTGTTGCCGGTATGCACGGTGTTAACGCTAAAGAACTTCAGTCAGCCTTACAAGGGCATCAACAACATTCACTTACTCATGCAG
ATATAGCCCTGATTCTTCTAGCTGAAATAGCATACGAGAATGATGAAGATTTTCGTGAGCACTTGCCTCTGCTTTTCCATGTCACATTCGTTTCAATGGA
TAGTTCGGAGGATATCGTGCTGGAACACTGTCAGCATTTGCTCGTTAATTTGCTCTACTCGCTAGCTGGTAGACACTTGGAGCTGTACGAAGTGGAAAAC
TGCGACGGGGAGAACAAGCAGCAGGTTGTCAGTCTGATCAAGTATGTACAATCGAAGCGGGGAAGCATGATGTGGGAAAACGAGGATCCTTCAGTTGTTC
GACCTGTTCTTCCGAGTGCAGCACTTCTCTCAGCGCTTGTTCAAAGCATGGTTGATGCTATCTTCTTTCAAGGAGATCTCCGCGAGACTTGGGGCACAGA
GGCTCTCAAGTGGGCTATGGAGTGCACATCAAGGCACTTGGCTTGCCGCTCCCACCAGATCTACCGTGCACTCCGTCCCAGTGTAACAAGTGATACTTGC
GTCTCACTCCTCAGATGTCTCCACAGATGTCTCATAAACCCGGTTCCCCCAGTTTTAGGGTTTATAATGGAAATCTTATTGACATTGCAAGTAATGGTGG
AGAATATGGAGCCAGAGAAAGTAATCCTCTACCCTCAGCTTTTTTGGGGATGTGTCGCGATGATGCACACTGATTTCATCCATGTATACTGCCAGGTGCT
TGAGCTCTTCTCCCGAGTTATCGACAGATTATCATTCCGAGATAGAACTACCGAAAACGTGCTCCTTTCAAGTATGCCTCGCGAGGAGCTAGATACCGAT
ACCGACATCGGTGATTTCCAACGAATGGAATCACTGGCATCATCTGGCGGAAATCTTCCAACGTTTGAAGGAGTTCAGCCTCTTGTTCTCAAAGGTCTAT
TATCGACCGTTAGCCACGATATCTCGATCGAAGTCCTATTGAGGATAACAGTCCACTCCTGCGATTCCATATTCGGAGATGGCGAAACGAGGCTTCTTAT
GCACGTCACCGGATTGCTCCCTTGGCTATGCTTGCAGTTCAACAAAGACGTAGCAGCTCCGCTCCAACAACCATCGCAAAAGGCTTGTTCCGTGGCGAAC
AACATTGCGTTATGGTGCCGTGCGAAATCGCAAGACGAATTGGCGACGGTATTCGTGGCCTACGCGCGTGGAGAGGTCAGAAGCATCGAGAATCTGCTCG
CCTGTGTCTCGCCGTTGTTATGTGCAGAGTGGTTCCCAAGGCACTCGACAATGGCGTTCGGGCACTTGCTCCGTCTATTGGAGAGAGGGCCGGCGGAATA
CCAGCGCGTGATCCTGCTGATGCTCAAGGCACTGCTCCAACACACTCCCATGGACGCTTCCCAAAGTCCACACATGTACGCGATTGTGTCGCAGTTAGTA
GAGAGCACTCTCTGCTGGGAGGCGCTGAGCGTGTTGGAAGCTCTTCTACAGAGCTGCAGTTCACTGCCGGGCGGATCCCATCCGCACGACGGTGGATCGT
CATCTTCGTCGGTACATGAGAATGGAGTTGATGATAACAAGGTATCCGGAACGCCTCAAACGTCCTTCAAGGGTAGGAGTGGGCCTTTGCAGTATGGAAT
GGGTTCGGGATTGTTTGGAGTGGGAGTTTCGGCGTTCGGGAGTCAAGGCGGAGGAGGAACGGAGACGGGGATTCCGGCGAGGGCGGTTGCTCTGGAGAAT
ACACGTGTTATACTTGGGAGAGTGCTGGACAATTGTGCACTTGGGAGAAGAAGGGATTATAAACGGCTGGTCCCTTTCGTAAACAACATCGGCTCTTGA
AA sequence
>Lus10031962 pacid=23161080 polypeptide=Lus10031962 locus=Lus10031962.g ID=Lus10031962.BGIv1.0 annot-version=v1.0
MSPLLVRGSLDGPLRNSSGSLSWRTAGATGRSVSGPLSPMPPELNVVPVTAGRSGQLLPALVNMSGPLMGVRSSTGSLRSRSRHVSRDSGDYLIDTPNSG
EDGLLPVAGMHGVNAKELQSALQGHQQHSLTHADIALILLAEIAYENDEDFREHLPLLFHVTFVSMDSSEDIVLEHCQHLLVNLLYSLAGRHLELYEVEN
CDGENKQQVVSLIKYVQSKRGSMMWENEDPSVVRPVLPSAALLSALVQSMVDAIFFQGDLRETWGTEALKWAMECTSRHLACRSHQIYRALRPSVTSDTC
VSLLRCLHRCLINPVPPVLGFIMEILLTLQVMVENMEPEKVILYPQLFWGCVAMMHTDFIHVYCQVLELFSRVIDRLSFRDRTTENVLLSSMPREELDTD
TDIGDFQRMESLASSGGNLPTFEGVQPLVLKGLLSTVSHDISIEVLLRITVHSCDSIFGDGETRLLMHVTGLLPWLCLQFNKDVAAPLQQPSQKACSVAN
NIALWCRAKSQDELATVFVAYARGEVRSIENLLACVSPLLCAEWFPRHSTMAFGHLLRLLERGPAEYQRVILLMLKALLQHTPMDASQSPHMYAIVSQLV
ESTLCWEALSVLEALLQSCSSLPGGSHPHDGGSSSSSVHENGVDDNKVSGTPQTSFKGRSGPLQYGMGSGLFGVGVSAFGSQGGGGTETGIPARAVALEN
TRVILGRVLDNCALGRRRDYKRLVPFVNNIGS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G15680 ARM repeat superfamily protein... Lus10031962
[exp]
0 1
AT2G02960 RING/FYVE/PHD zinc finger supe... Lus10037172
[exp]
8.8 0.8526
AT1G77180 SKIP chromatin protein family (.1.2... Lus10027158
[exp]
9.3 0.8384
AT4G25300 2-oxoglutarate (2OG) and Fe(II... Lus10032574
[exp]
18.0 0.8392
AT4G25150 HAD superfamily, subfamily III... Lus10007939
[exp]
18.5 0.8295
AT1G06570 HPPD, HPD, PDS1 4-hydroxyphenylpyruvate dioxyg... Lus10029820
[exp]
26.3 0.8155
AT2G31880 SOBIR1, EVR SUPPRESSOR OF BIR1 1, EVERSHED... Lus10041953
[exp]
30.6 0.8114
AT5G09570 Cox19-like CHCH family protein... Lus10020462
[exp]
30.8 0.8131
AT1G24350 Acid phosphatase/vanadium-depe... Lus10036984
[exp]
31.5 0.7876
AT5G42190 SKP1B, ASK2 Arabidopsis SKP-like 2, E3 ubi... Lus10017282
[exp]
31.8 0.8340
AT5G54310 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.... Lus10011238
[exp]
35.2 0.7996

Lus10031962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.