Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50310 87 / 1e-21 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT3G06030 88 / 2e-21 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT5G67080 86 / 7e-21 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT1G54960 86 / 2e-20 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT3G46140 84 / 2e-20 Protein kinase superfamily protein (.1) AT1G09000 83 / 1e-19 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT5G55090 81 / 3e-19 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT4G36950 79 / 2e-18 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT1G07150 79 / 2e-18 MAPKKK13 mitogen-activated protein kinase kinase kinase 13 (.1.2) AT2G42550 76 / 3e-17 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011778 [exp] 141 / 1e-43 AT3G50310 96 / 2e-23 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10026894 [exp] 130 / 3e-38 AT3G50310 187 / 1e-57 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029047 [exp] 125 / 6e-38 AT3G50310 93 / 5e-23 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029019 [exp] 123 / 3e-37 AT3G50310 96 / 3e-24 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029023 [exp] 124 / 8e-37 AT3G50310 147 / 8e-43 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034285 [exp] 124 / 9e-36 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1) Lus10034288 [exp] 123 / 1e-35 AT3G50310 181 / 5e-55 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034242 [exp] 122 / 2e-35 AT3G50310 190 / 2e-58 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10039141 [exp] 110 / 2e-30 AT3G46140 168 / 1e-49 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G139300 [exp] 92 / 2e-23 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G033400 [exp] 87 / 6e-21 AT1G09000 680 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.007G044800 [exp] 84 / 2e-20 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.013G022700 [exp] 85 / 3e-20 AT1G09000 713 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.008G149500 [exp] 84 / 4e-20 AT3G06030 681 / 0.0 NPK1-related protein kinase 3 (.1) Potri.005G139200 [exp] 82 / 2e-19 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.010G092000 [exp] 82 / 2e-19 AT3G06030 698 / 0.0 NPK1-related protein kinase 3 (.1) Potri.001G278600 [exp] 81 / 6e-19 AT1G07150 353 / 2e-117 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.009G131100 [exp] 79 / 1e-18 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.014G155000 [exp] 79 / 1e-18 AT1G05100 317 / 3e-107 mitogen-activated protein kinase kinase kinase 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10031963 pacid=23161275 polypeptide=Lus10031963 locus=Lus10031963.g ID=Lus10031963.BGIv1.0 annot-version=v1.0 ATGAAGACTCCGGAGGTCAGTACGATCACTAGTAGTAGGAATGCTAGAGGGACGTTGATGTACATGGCACCGGAGGTGCTTCTCTCCGGGAAGGTTTCTC CGGCGATGGATATATGGAGTTTCAGATGTAGCGTGATTGGAATGCTGGCGGGGGAGTTGCCCTGGAGCCAATGCAAAGTTGATTCAGAAGTGATTATGCA GATATGTAAAGGGTGTCAGCCTGAGATTCCAGAGTGGCTTTGTGAACAAGGTAAGGGTTTCCTCAACAAGTGCTTTGTTAGGGATCCAAACCGCCGCCTC CCTGCTCCAATGCTTCTCCAACATCCCTTCTTAAACAAGAAGAAATAA
AA sequence Show only first row Show all	>Lus10031963 pacid=23161275 polypeptide=Lus10031963 locus=Lus10031963.g ID=Lus10031963.BGIv1.0 annot-version=v1.0 MKTPEVSTITSSRNARGTLMYMAPEVLLSGKVSPAMDIWSFRCSVIGMLAGELPWSQCKVDSEVIMQICKGCQPEIPEWLCEQGKGFLNKCFVRDPNRRL PAPMLLQHPFLNKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10031963 [exp]	0	1
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10017170 [exp]	8.2	0.6773
					Lus10019981 [exp]	16.6	0.6508
AT4G27730		ATOPT6	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10007770 [exp]	17.7	0.6138
AT5G04020			calmodulin binding (.1)		Lus10031023 [exp]	18.2	0.5836
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10037323 [exp]	21.4	0.6203
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10019760 [exp]	21.9	0.6402
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10039772 [exp]	23.7	0.6090
AT4G15390			HXXXD-type acyl-transferase fa...		Lus10017702 [exp]	24.2	0.6322
					Lus10010466 [exp]	34.0	0.5561
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10032586 [exp]	38.3	0.6203

Compare expression of checked genes

Lus10031963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.