Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68400 553 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G08680 315 / 7e-98 Leucine-rich repeat protein kinase family protein (.1.2) AT3G17840 305 / 4e-94 RLK902 receptor-like kinase 902 (.1) AT3G02880 297 / 2e-91 Leucine-rich repeat protein kinase family protein (.1) AT1G48480 288 / 1e-87 RKL1 receptor-like kinase 1 (.1) AT2G36570 258 / 2e-76 Leucine-rich repeat protein kinase family protein (.1) AT1G10850 243 / 1e-70 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 242 / 2e-70 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 240 / 7e-70 Leucine-rich repeat protein kinase family protein (.1.2) AT4G23740 238 / 6e-69 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035138 [exp] 964 / 0 AT1G68400 746 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10002299 [exp] 257 / 7e-80 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10029005 [exp] 264 / 9e-78 AT5G58300 612 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10004040 [exp] 256 / 7e-76 AT1G48480 694 / 0.0 receptor-like kinase 1 (.1) Lus10017756 [exp] 254 / 1e-74 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017178 [exp] 254 / 2e-74 AT2G36570 872 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033065 [exp] 251 / 3e-74 AT2G26730 768 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021131 [exp] 252 / 1e-73 AT2G36570 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021673 [exp] 246 / 4e-72 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G121700 [exp] 608 / 0 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.015G035500 [exp] 346 / 8e-110 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.006G228400 [exp] 346 / 1e-109 AT1G68400 357 / 3e-114 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G131500 [exp] 332 / 1e-104 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 323 / 5e-101 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 320 / 3e-99 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.006G117200 [exp] 313 / 6e-97 AT2G36570 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044600 [exp] 250 / 2e-73 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1) Potri.018G074300 [exp] 248 / 7e-73 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G139200 [exp] 248 / 8e-73 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031965 pacid=23161331 polypeptide=Lus10031965 locus=Lus10031965.g ID=Lus10031965.BGIv1.0 annot-version=v1.0 ATGGCGGTCAAACACCCTTCCCAGCTCCCACATTTCTCCATCCCTCTCTTCCTCTTCCTAAACCTCACCCTCGCCTTAAGCTTAACCCTCGATCACCCAG ATTTACACCCACTCATTAACTTCAAATCATCCGCCGACCCATCCAACCGTCTCTCCGGCTGGAACTACTCCGCCGCCGCCGACCTCTGCAATTGGACCGG AGTTTCCTGCTCCCAAAACAGAGTCTCCCGTTTGGTCCTCGAAAACCTCGACCTAAACGGCTCTTTCATCGAACCCTTGACTTCCCTCACCCACCTCCGA GTCCTCAGCCTCAAATCAAACTCACTCTCAGGACCCATCCCTCACTCGTTCTCCAACCTCACTTCCTTAAAACTCCTCTTCCTCTCCCGCAACCGCTTCT CCGGCGAGTTCCCTCCGTCTCTCCTCTCACTCCGCCGTCTCTTCCGCCTGGATCTCTCTCGTAACAACTTCTCCGGCCCCATCCCGTCCGCAGACCATTT GACTCATCTGTTGACTCTCCGACTCGAGGACAACAATTTCTCCGGTTTAATCTCCAATTTAGACCTGCCGGTTAGTATCCAGGATTTCAATCTCCCTCTC AGTATCCAGGATTTCAACGTCTCCGGAAACCGCCTCTCCGGCGAGATCCCCAAATCTCTTTCCGGTTTCCCCGTTTCGTCCTTCTCTGGCAACACAGCTC TCTGCGGAGGACCGTTGGGTACAAAATGCCAAGGAATCGGACCGGGTGGGTCGGGTTCGTCGGACCCGACCCGGCCAGGAGGTGTAGAGATTGCATCTCC GGTCACGCCGGGGGTGGTAGTATCTTCATCCCCGAGCTCGTTGCCGACGGGGACCTCGCCTAAGAAGCCGGCGGCGGCGAACAGCGGCGGCGAGAAGTCG AGTGCGGCGGCGAAGATAAGTCCGGTGGCGTTAATCGCCATCATTCTGGGCGACGTGCTGATACTGGCGGTGGTTTCTCTGCTGCTATACTGCTACTTCT GGAGGAACTACGCGGCGAAGCTGATGACGATGAGGAAAGGAGGAGGGAAGCTGTCCACGACGACAATGGAGTCGGAGAAGATCGTGTACTCGTCGAGCCC GTACCCGGACCCAGCCCGAATGCAGAGCCTCGGAGGAGGGAGGGGGATGGCGGCGATGGTGTTCTTCGAAGGGGCGAAGAGGTTCGAGCTGGAGGATTTG TTGAGAGCTTCAGCGGAGATGCTGGGGAAAGGCGGATTCGGTACGGCGTACAAGGCGGTTCTCGACGTACATCCCCAGCGGCAGCCTCTTCTGGCTTCTT CACGAGTGACTGTTAACAACCCTCCAAAGCTAACAAAACGTACCAAAACAGATTTCACATTCAATGGCGGTACCAGTAATGTCGTACTAGTAATATTGGC TAATAATTTTGATACACGCACAGGAAACCGTGGACCAGGAAGAACCCCACTTGACTGGAACATAAGGCTAAAGATAGCAGCAGGAGCAGCTAGAGGCCTA GCCTTCATCCACTCATCCTGTTCATCCCTCAAGCTCACCCACGGTAACATCAAGTCAACCAACATCCTCCTCGACCAATCGGGCAACGCTCGAGTCTCCG ATTTCGGCCTATCACTATTCGCCTCCTCCTCATCCAGCAGCAACGGCTACCGCGCTCCAGAATCCAACGTCTCAAAACTGACACAGAAATCGGACGTGTA CTCATTTGGAGTGCTGCTCCTGGAAATGCTGACTGGGAAGTGCCCGAATTCAGTGTCTGGTGATCATTATGGCGGAGGAAGTGGCGGCGGTGGGGCAGTT GACTTGCCTCGGTGGGTGCAGAGTGTGGTGAGGGAGGAGTGGACGGCGGAGGTGTTTGATTTGGAGTTGATGAGGTATAAGGATATAGAGGAGGAGATGG TGGGGCTGTTGCAGATAGCAATGGTGTGTAGTTCGCCGGCCCCCGATCAGAGGCCGAAGATGGGACAGGTTGTGAAGATGATTGAGGAGTTGAGAGGCGT TTCTGTTGATCATCAGGTGTCTCCCGGTGGTCATGAGTCTGTGTCGGATTCTCCTTTGTGGGAAGATACCGCCACCAGTCAGTAA
AA sequence Show only first row Show all	>Lus10031965 pacid=23161331 polypeptide=Lus10031965 locus=Lus10031965.g ID=Lus10031965.BGIv1.0 annot-version=v1.0 MAVKHPSQLPHFSIPLFLFLNLTLALSLTLDHPDLHPLINFKSSADPSNRLSGWNYSAAADLCNWTGVSCSQNRVSRLVLENLDLNGSFIEPLTSLTHLR VLSLKSNSLSGPIPHSFSNLTSLKLLFLSRNRFSGEFPPSLLSLRRLFRLDLSRNNFSGPIPSADHLTHLLTLRLEDNNFSGLISNLDLPVSIQDFNLPL SIQDFNVSGNRLSGEIPKSLSGFPVSSFSGNTALCGGPLGTKCQGIGPGGSGSSDPTRPGGVEIASPVTPGVVVSSSPSSLPTGTSPKKPAAANSGGEKS SAAAKISPVALIAIILGDVLILAVVSLLLYCYFWRNYAAKLMTMRKGGGKLSTTTMESEKIVYSSSPYPDPARMQSLGGGRGMAAMVFFEGAKRFELEDL LRASAEMLGKGGFGTAYKAVLDVHPQRQPLLASSRVTVNNPPKLTKRTKTDFTFNGGTSNVVLVILANNFDTRTGNRGPGRTPLDWNIRLKIAAGAARGL AFIHSSCSSLKLTHGNIKSTNILLDQSGNARVSDFGLSLFASSSSSSNGYRAPESNVSKLTQKSDVYSFGVLLLEMLTGKCPNSVSGDHYGGGSGGGGAV DLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMVCSSPAPDQRPKMGQVVKMIEELRGVSVDHQVSPGGHESVSDSPLWEDTATSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68400			leucine-rich repeat transmembr...		Lus10031965 [exp]	0	1
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10034881 [exp]	1.4	0.9521
AT1G68400			leucine-rich repeat transmembr...		Lus10035138 [exp]	1.4	0.9561
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Lus10041730 [exp]	1.7	0.9452
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10029071 [exp]	2.4	0.9370
AT5G67200			Leucine-rich repeat protein ki...		Lus10041101 [exp]	3.7	0.9361
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10018655 [exp]	4.0	0.9416
AT5G03970			F-box associated ubiquitinatio...		Lus10042547 [exp]	6.9	0.9206
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Lus10011862 [exp]	7.7	0.9156
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10016110 [exp]	8.9	0.9255
AT5G43020			Leucine-rich repeat protein ki...		Lus10018733 [exp]	9.4	0.9072

Compare expression of checked genes

Lus10031965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.