Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29900 288 / 2e-94 PS2 Presenilin-2 (.1) AT1G08700 131 / 4e-34 PS1 Presenilin-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035137 [exp] 414 / 3e-145 AT2G29900 410 / 1e-143 Presenilin-2 (.1) Lus10020339 [exp] 213 / 1e-64 AT1G08700 531 / 0.0 Presenilin-1 (.1) Lus10009518 [exp] 208 / 1e-62 AT1G08700 538 / 0.0 Presenilin-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G058301 [exp] 328 / 3e-109 AT2G29900 431 / 1e-149 Presenilin-2 (.1) Potri.013G067700 [exp] 220 / 3e-67 AT1G08700 494 / 1e-173 Presenilin-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0130 [flax] [poplar] Peptidase_AD PF01080 [flax] [poplar] Presenilin Presenilin
Representative CDS sequence Show only first row Show all	>Lus10031966 pacid=23161069 polypeptide=Lus10031966 locus=Lus10031966.g ID=Lus10031966.BGIv1.0 annot-version=v1.0 ATGGACGAACGAACCCAGAGACCCAGAAGAAGAAGCAGCATAATCGATTCTCTGGGCGAAGAGATCGTCAGAATCGTAACCCCAGTCTCAATCTGCATGT TCCTAGTGGTAATTCTCGTCTCTCTTCTCAATTCATCCCCGTCTTCCTCAACCCCCACCGTAAACACCATGGCTACCATAGCCTACACCGAGACCACCTC CGATTCCGTCTGGGAAAAGCTCCAAGGCGCCCTATTGAATGCCCTAGTCTTCGTAGTCGTGGTCACCCTCGCCACTTTCTTCATGGTCCTCCTCTTCTAC TTCAGATGCACTCATTTCCTCAAGTTCTACATGGCTTTCTCTTCTTTCACCGTCCTGCTCTTCCTCGGCGGCGTCATCGCGCTTTTCCTCATCAGGAAAT GCAGCTTCCCAATCGACTGTTTCACATTTCTGGTAGTGCTGTACAATTTCTCCGCCGTGGGTGTTTTGTCCGTGTTCCTGTCGAAATTCGCCATTGTTGT TACTCAGGGTTATCTGGTTGGTTTTGGGGTTTTGGTTGCTTATTGGTTCACTCTTCTCCCTGAATGGACCACTTGGACTCTGTTAGTTGCTCTGGCTTTT TATGATCTTGCAGCTGTTCTTTTGCCTGTTGGCCCCTTGAGATTACTCGTCGAGCTTGCAATCTCTAGGGATGAGGATATCCCTGCTTTGGTCTACGAGG CTCGTCCCGTAGTGGCCAACCATGATCAGGGCTCAAGAATTGACAATGTAGGGGAAACAAGGGCTTGGAGGCAAAGGAGAAACTCAGGAAATGGTTCAGA TTCGAGCTTGATTATCACCGAAGAGGGGCGAGGTCTTACTGCACCTTTGATTCAGAATAGGGATGGACAGGGAGGAGGAAGTCTGTCAAGTGAAAGCTTT CTGGAAGGTATTGGACTGGGATCAAGTGGTGCTATAAAGTTGGGACTTGGGGACTTCATTTTCTACAGTGTGTTGGTTGGAAGAGCAGCTATGTATGATT TCATGACTGTGTATGCTTGCTACTTGGCTATCATAGCTGGTTTAGGTGTTACGTTGATGCTTCTGGCGTTGTATCAGCAAGCTTTACCAGCCCTTCCTGT GTCAATTGCTCTAGGGGTGTTGTTTTATTTCTTGACAAGGCTCCTACTTGAAGAACTCATCGTGCAGTGTTCTCTCAACCTTGTAATGTTTTAG
AA sequence Show only first row Show all	>Lus10031966 pacid=23161069 polypeptide=Lus10031966 locus=Lus10031966.g ID=Lus10031966.BGIv1.0 annot-version=v1.0 MDERTQRPRRRSSIIDSLGEEIVRIVTPVSICMFLVVILVSLLNSSPSSSTPTVNTMATIAYTETTSDSVWEKLQGALLNALVFVVVVTLATFFMVLLFY FRCTHFLKFYMAFSSFTVLLFLGGVIALFLIRKCSFPIDCFTFLVVLYNFSAVGVLSVFLSKFAIVVTQGYLVGFGVLVAYWFTLLPEWTTWTLLVALAF YDLAAVLLPVGPLRLLVELAISRDEDIPALVYEARPVVANHDQGSRIDNVGETRAWRQRRNSGNGSDSSLIITEEGRGLTAPLIQNRDGQGGGSLSSESF LEGIGLGSSGAIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGVTLMLLALYQQALPALPVSIALGVLFYFLTRLLLEELIVQCSLNLVMF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29900		PS2	Presenilin-2 (.1)		Lus10031966 [exp]	0	1
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10018737 [exp]	2.0	0.8900
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10009565 [exp]	4.5	0.8724
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10037125 [exp]	5.3	0.8487
AT5G13970			unknown protein		Lus10035116 [exp]	5.7	0.8524
AT3G25580			Thioredoxin superfamily protei...		Lus10013889 [exp]	5.7	0.8573
AT4G35870			early-responsive to dehydratio...		Lus10041862 [exp]	6.9	0.8536
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Lus10032227 [exp]	6.9	0.8584
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10006364 [exp]	9.5	0.8548
AT2G13690			PRLI-interacting factor, putat...		Lus10020892 [exp]	10.0	0.8273
AT4G02720			unknown protein		Lus10022052 [exp]	11.8	0.8514

Compare expression of checked genes

Lus10031966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.