Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01240 367 / 1e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G05390 332 / 3e-109 unknown protein AT5G40830 229 / 2e-70 ATRAD3, ATATR S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G27230 229 / 3e-70 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29790 209 / 8e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G43200 46 / 4e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035135 [exp] 798 / 0 AT4G01240 367 / 1e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010138 [exp] 361 / 1e-120 AT4G01240 620 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10029907 [exp] 332 / 1e-109 AT3G05390 697 / 0.0 unknown protein Lus10004494 [exp] 332 / 2e-109 AT3G05390 699 / 0.0 unknown protein Lus10020803 [exp] 244 / 8e-76 AT5G40830 282 / 1e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007385 [exp] 235 / 2e-72 AT5G40830 277 / 1e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10034506 [exp] 228 / 1e-69 AT3G27230 599 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024318 [exp] 220 / 1e-66 AT3G27230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033164 [exp] 223 / 4e-66 AT3G27230 451 / 3e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G116900 [exp] 542 / 0 AT4G01240 388 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G165300 [exp] 359 / 9e-120 AT4G01240 662 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.013G019400 [exp] 329 / 2e-108 AT3G05390 753 / 0.0 unknown protein Potri.017G135100 [exp] 253 / 9e-80 AT3G05390 278 / 3e-89 unknown protein Potri.004G083800 [exp] 252 / 5e-79 AT3G05390 278 / 3e-89 unknown protein Potri.004G231100 [exp] 244 / 9e-76 AT3G05390 287 / 2e-92 unknown protein Potri.005G236600 [exp] 232 / 4e-71 AT3G27230 634 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G024800 [exp] 225 / 1e-68 AT3G27230 600 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G352700 [exp] 204 / 3e-61 AT1G29790 437 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.011G079000 [exp] 192 / 1e-56 AT1G29790 439 / 2e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031968 pacid=23161265 polypeptide=Lus10031968 locus=Lus10031968.g ID=Lus10031968.BGIv1.0 annot-version=v1.0 ATGCAGAAACAAAGCAACTCAAGATCATGGAAATGCTTCCCTGGAGGAGGAAGAAGAACAACTCTGGTAATGCTATGCCCTCTCTTGCTTCTTTCCACTT TCACAATCTTCATACTCATGAGCTCAAACATCTCTTATTACCCTTCTCAATATTTCCACATTCCGAGAGAAATCTGCAGCAATACTCAAATCCATACTCA AATCGCCACCTTGCAGGCTCAAATGGGCTCATTGCTACAACAGCTGCATACTCATCATGACAGTACTCTTCCAGGAAATCTGTCGAATTTTTCTGATCAA CTTCTTCACTTGGCAGTTTCTCTTGACAAGATTGCAGGCAGCCTTATTTCAAACCCTTCTTCCAGTACTAGTAGCGAAACAAGCAAAATCAACAAGGATT TCAGCGAGCCAGAGGAATATGATGACGAGAACGAAGAGGGATCGATCAGTGTAAAGGGTTTTACTTCAGGTGGTGAGGTTTACAGCTACATATCACCAAA GTCAAACAGGGAAAAGGGGAAGAAGAACTTTCTTGGAGTGGAAGCAATTAGTTCTGCGATAGGGTTTGGTTGTACTCATATGGCTGCACATTTAGACCAT TTCATGAAGTACAAGAAGTATGAGATGTGTCCAGATGATTGGGATGTTGCTCAAAGGTTGATGATCAATGGCTGCGATCCACTTCCAAGGAGGAAATGTT TCTCAAGAGCACCTCCAACTAACGGTACGAATCCGCCATTTTCGAACTCCTCATTTCTTTGGACTCAGCCGAGTGACGGTAACATCCTCTGGAATCGTTA CAAATGCAAAAGCTATACATGCCTTGTTTCGCAAGATTCTATGGACAAGAGAGGGTTCTTCAAATGTGGAGACTGTTTCAACCTCACAAAAAGAGGGTGG GACGATGTAGGTACGAGTACGAACGAATCTGCAATGTCAGCCAAGTTCACGATCAATCAAGTTCTGGGACTGAGACCGGGCGAGATTCGAATAGGGCTCG ATTTCAGCCCCACAACTGGCACATTCGCAGCGATAATGAAGGAGAGAGGAGTGACGATTGCTTCAGCTACACTCAACTTAGGTGCGCCATTTAATGAAGT GGTTGCACTGAGAGGTCTCTTGCCTCTTTATATATCTGTGGGGACAAGGCTGCCGTTCTTTGACAACACACTAGACATTGTTCATTCTACGCTGTTCTTG GACGGGTGGATAGGCGTGGAACTGCTTCAGTTTGTGTTGTTCGATTGGGATCGGGTTCTTCGACCGAAGGGACTCCTGTGGGTGGATAGATTCTTCTGCA AGAAAGAAGACATGAAGATGTACTTGGATGAATTTGAAAGGCTTGGGTATGCAAAGTTGCTGTGGAGAGTTGTGCCTAAGACAGATAAACTAGGAGATGA ACTTTTTCTCTCTGCTGTTCTGGAAAAGCCCACAAGGAAATAG
AA sequence Show only first row Show all	>Lus10031968 pacid=23161265 polypeptide=Lus10031968 locus=Lus10031968.g ID=Lus10031968.BGIv1.0 annot-version=v1.0 MQKQSNSRSWKCFPGGGRRTTLVMLCPLLLLSTFTIFILMSSNISYYPSQYFHIPREICSNTQIHTQIATLQAQMGSLLQQLHTHHDSTLPGNLSNFSDQ LLHLAVSLDKIAGSLISNPSSSTSSETSKINKDFSEPEEYDDENEEGSISVKGFTSGGEVYSYISPKSNREKGKKNFLGVEAISSAIGFGCTHMAAHLDH FMKYKKYEMCPDDWDVAQRLMINGCDPLPRRKCFSRAPPTNGTNPPFSNSSFLWTQPSDGNILWNRYKCKSYTCLVSQDSMDKRGFFKCGDCFNLTKRGW DDVGTSTNESAMSAKFTINQVLGLRPGEIRIGLDFSPTTGTFAAIMKERGVTIASATLNLGAPFNEVVALRGLLPLYISVGTRLPFFDNTLDIVHSTLFL DGWIGVELLQFVLFDWDRVLRPKGLLWVDRFFCKKEDMKMYLDEFERLGYAKLLWRVVPKTDKLGDELFLSAVLEKPTRK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10031968 [exp]	0	1
AT3G21690			MATE efflux family protein (.1...		Lus10027169 [exp]	2.8	0.8947
					Lus10021703 [exp]	7.5	0.8823
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10000474 [exp]	11.7	0.8228
					Lus10036165 [exp]	12.6	0.8750
AT1G75560			zinc knuckle (CCHC-type) famil...		Lus10035476 [exp]	12.6	0.8404
AT2G37470			Histone superfamily protein (....		Lus10023753 [exp]	15.1	0.8768
AT5G49690			UDP-Glycosyltransferase superf...		Lus10027850 [exp]	17.0	0.8825
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10038070 [exp]	19.9	0.8674
AT5G09360		LAC14	laccase 14 (.1)		Lus10041066 [exp]	25.3	0.8304
AT1G26750			unknown protein		Lus10019740 [exp]	29.0	0.8615

Compare expression of checked genes

Lus10031968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.