Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15640 381 / 4e-134 Mitochondrial substrate carrier family protein (.1) AT1G72820 214 / 7e-68 Mitochondrial substrate carrier family protein (.1) AT5G26200 191 / 3e-59 Mitochondrial substrate carrier family protein (.1) AT1G07030 85 / 5e-19 Mitochondrial substrate carrier family protein (.1) AT2G30160 82 / 5e-18 Mitochondrial substrate carrier family protein (.1) AT1G34065 71 / 9e-14 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G39460 67 / 1e-12 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT5G42130 67 / 1e-12 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) AT4G11440 66 / 4e-12 Mitochondrial substrate carrier family protein (.1) AT2G47490 64 / 1e-11 ATNDT1 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035134 [exp] 500 / 1e-180 AT5G15640 477 / 2e-170 Mitochondrial substrate carrier family protein (.1) Lus10041498 [exp] 424 / 2e-150 AT5G15640 494 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10012597 [exp] 426 / 2e-149 AT5G15640 488 / 9e-173 Mitochondrial substrate carrier family protein (.1) Lus10025015 [exp] 183 / 6e-56 AT5G26200 414 / 3e-145 Mitochondrial substrate carrier family protein (.1) Lus10026466 [exp] 181 / 4e-55 AT5G26200 409 / 5e-143 Mitochondrial substrate carrier family protein (.1) Lus10026468 [exp] 181 / 7e-55 AT5G26200 416 / 7e-146 Mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 79 / 8e-17 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10042258 [exp] 78 / 2e-16 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1) Lus10001463 [exp] 69 / 4e-13 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G098500 [exp] 405 / 2e-143 AT5G15640 460 / 3e-164 Mitochondrial substrate carrier family protein (.1) Potri.004G117000 [exp] 403 / 2e-142 AT5G15640 434 / 1e-153 Mitochondrial substrate carrier family protein (.1) Potri.008G100100 [exp] 241 / 6e-79 AT5G15640 338 / 5e-116 Mitochondrial substrate carrier family protein (.1) Potri.018G050300 [exp] 192 / 2e-59 AT1G72820 435 / 2e-153 Mitochondrial substrate carrier family protein (.1) Potri.006G223600 [exp] 187 / 1e-57 AT1G72820 429 / 7e-151 Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 87 / 1e-19 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1) Potri.001G182000 [exp] 79 / 9e-17 AT1G79900 424 / 1e-150 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.009G077600 [exp] 77 / 5e-16 AT1G07030 425 / 4e-150 Mitochondrial substrate carrier family protein (.1) Potri.001G282400 [exp] 76 / 7e-16 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1) Potri.005G197200 [exp] 75 / 2e-15 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10031969 pacid=23161079 polypeptide=Lus10031969 locus=Lus10031969.g ID=Lus10031969.BGIv1.0 annot-version=v1.0 ATGGACAAATCTACCAACGTCCGACAACCTTCCTTTGGCCACGCCGAGATCAATTGGGACAAGCTTGACAAGACTAAACTTTATGTCATGGGAGCTGGCA TTTTCACCGGGATTACTGTAGCACTGTATCCTATATCTGTTATAAAAACTAGGCTCCAGGTTGCTACAAAGGATACAGGTGAGAGAAATGCATTTTCTGT CATCAGAGGCTTAGTGAAGACGGATGGTATTCCTGGTCTATACCGAGGGTTTGGTACAGTGATAACTGGGGCTGTCCCTGCCAGGATTATCTTTCTCACA GCTTTAGAGACTACTAAAGTGGCATCTTTCAAAATGGTCGAGTCGTTCAAGTTATCCGAAGCTTCAGAAGCTGCCGTTGCTAATGGAATTGCTGGCATGG CAGCCTCTTTGTGCTCACAGGGTGTGTTCGTTCCAATTGACGTGGTCAGTCAAAAGTTGATGGTCCAAGGATATTCTGGTCATGAGAAATATAAGGGGGG TCTAGATGTTGCTCGAAAGGTCATTAAAAGTGATGGGATCCGTGGATTGTACAGGGGATTTGGACTTTCAGTCATGACTTATTCTCCATCGAGCGCTGTA TGGTGGGCGAGCTATGGTTCAAGCCAACGCATTATATGGAGGTATCTAGGTTATGGTACTGATCCTGAGCCCGCTGCCCCTAGTGGGATGAATATAGCCC TAGTTCAAACTGCGGGAGGGGTTATTGCAGGAGCAACTGCTTCTTGCATCACAACTCCGTTGGATACTATAAAGACACGGTTGCAGCTAGAGCAGTAA
AA sequence Show only first row Show all	>Lus10031969 pacid=23161079 polypeptide=Lus10031969 locus=Lus10031969.g ID=Lus10031969.BGIv1.0 annot-version=v1.0 MDKSTNVRQPSFGHAEINWDKLDKTKLYVMGAGIFTGITVALYPISVIKTRLQVATKDTGERNAFSVIRGLVKTDGIPGLYRGFGTVITGAVPARIIFLT ALETTKVASFKMVESFKLSEASEAAVANGIAGMAASLCSQGVFVPIDVVSQKLMVQGYSGHEKYKGGLDVARKVIKSDGIRGLYRGFGLSVMTYSPSSAV WWASYGSSQRIIWRYLGYGTDPEPAAPSGMNIALVQTAGGVIAGATASCITTPLDTIKTRLQLEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15640			Mitochondrial substrate carrie...		Lus10031969 [exp]	0	1

Compare expression of checked genes

Lus10031969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.