Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60335 151 / 7e-47 Thioesterase superfamily protein (.1) AT3G29970 60 / 5e-12 B12D protein (.1) AT3G48140 45 / 1e-06 B12D protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009162 [exp] 217 / 9e-73 AT5G60335 191 / 6e-63 Thioesterase superfamily protein (.1) Lus10028483 [exp] 211 / 1e-70 AT5G60335 188 / 6e-62 Thioesterase superfamily protein (.1) Lus10035132 [exp] 64 / 2e-13 AT3G29970 112 / 5e-34 B12D protein (.1) Lus10004241 [exp] 49 / 5e-08 AT3G48140 132 / 4e-42 B12D protein (.1) Lus10042151 [exp] 49 / 5e-08 AT3G48140 132 / 4e-42 B12D protein (.1) Lus10015825 [exp] 45 / 2e-06 AT3G48140 150 / 3e-49 B12D protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G133800 [exp] 147 / 5e-45 AT5G60335 208 / 2e-69 Thioesterase superfamily protein (.1) Potri.017G098800 [exp] 57 / 7e-11 AT3G29970 131 / 9e-42 B12D protein (.1) Potri.004G117300 [exp] 56 / 1e-10 AT3G29970 126 / 9e-40 B12D protein (.1) Potri.012G074900 [exp] 51 / 1e-08 AT3G48140 137 / 8e-44 B12D protein (.1) Potri.008G179401 [exp] 45 / 1e-06 AT3G48140 137 / 8e-44 B12D protein (.1) Potri.010G055300 [exp] 46 / 2e-06 AT3G48140 132 / 8e-41 B12D protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF01575 [flax] [poplar] MaoC_dehydratas MaoC like domain CL0050 [flax] [poplar] PF06522 [flax] [poplar] B12D NADH-ubiquinone reductase complex 1 MLRQ subunit
Representative CDS sequence Show only first row Show all	>Lus10031971 pacid=23161120 polypeptide=Lus10031971 locus=Lus10031971.g ID=Lus10031971.BGIv1.0 annot-version=v1.0 ATGGGTCGTTGGATAAGACCAGAGGTTTACCCGCTGCTAGTGCCAATGGGATTTGTGTTGACCCTCGTGGGGTTTCAGCTGAGCAGAAACGTTATTCAGA ACCCTGATGTTAGCCTCCCTTCTGCAATGGTGGCCATCAAGAGTTTCATACATAGATGCCTGTCAACCGGAGCTACTTTCCGGCCACTTAGAATCGGGGA CATTCTACGACGAACTAGAGTCTTCTCACTCGAAGACATTCTTCAATATTCAGAGGTGAGTCTAGATTCCAACCCTCTACATCTTGATGCTGAAGTGGCT CGGGATTCAAGGTTCAAGGATCGATTAGTTCATGGAATGCTCGTTGCTACACTATTCCCTTGCATCATCTCGTCTCATTTTCCGGGTGCTATTTACACAT CCAAGAGCCTGCATTTCAAGATACCGGTGTATATGGAGAAGAGATTACATGGGAGCGCTAAATTCGTAACGAAATGCTTCAAGAGGAAGGATGGCAATGA CATGCTAGTTATTGATGGCGAGGCTACTGCAATTTTGCCCTCTTTGAAGGTGGTGAGAGGATTGATCTCGGTAACCGATTTTTTCGAGGGATAA
AA sequence Show only first row Show all	>Lus10031971 pacid=23161120 polypeptide=Lus10031971 locus=Lus10031971.g ID=Lus10031971.BGIv1.0 annot-version=v1.0 MGRWIRPEVYPLLVPMGFVLTLVGFQLSRNVIQNPDVSLPSAMVAIKSFIHRCLSTGATFRPLRIGDILRRTRVFSLEDILQYSEVSLDSNPLHLDAEVA RDSRFKDRLVHGMLVATLFPCIISSHFPGAIYTSKSLHFKIPVYMEKRLHGSAKFVTKCFKRKDGNDMLVIDGEATAILPSLKVVRGLISVTDFFEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60335			Thioesterase superfamily prote...		Lus10031971 [exp]	0	1
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10020644 [exp]	1.7	0.9914
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10003601 [exp]	2.8	0.9897
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10039867 [exp]	4.0	0.9877
AT1G32160			Protein of unknown function (D...		Lus10035392 [exp]	4.6	0.9877
AT1G71695			Peroxidase superfamily protein...		Lus10028689 [exp]	4.9	0.9878
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10034426 [exp]	5.7	0.9886
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Lus10035670 [exp]	6.0	0.9863
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10030531 [exp]	7.5	0.9887
AT5G39160			RmlC-like cupins superfamily p...		Lus10032015 [exp]	8.5	0.9873
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10011346 [exp]	9.9	0.9868

Compare expression of checked genes

Lus10031971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.