Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15630 704 / 0 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G60920 601 / 0 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G02210 589 / 0 COBL1 COBRA-like protein 1 precursor (.1) AT3G29810 588 / 0 COBL2 COBRA-like protein 2 precursor (.1) AT1G09790 416 / 6e-143 COBL6 COBRA-like protein 6 precursor (.1) AT5G60950 209 / 9e-66 COBL5 COBRA-like protein 5 precursor (.1) AT5G49270 147 / 2e-38 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT4G16120 144 / 3e-37 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT4G27110 140 / 7e-36 COBL11 COBRA-like protein 11 precursor (.1) AT3G20580 133 / 2e-33 COBL10 COBRA-like protein 10 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035131 [exp] 868 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017863 [exp] 672 / 0 AT5G15630 717 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034670 [exp] 670 / 0 AT5G15630 715 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034671 [exp] 612 / 0 AT5G60920 732 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10021144 [exp] 611 / 0 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10007986 [exp] 608 / 0 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017866 [exp] 607 / 0 AT5G15630 625 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034666 [exp] 605 / 0 AT5G15630 627 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10012598 [exp] 586 / 0 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060100 [exp] 691 / 0 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 686 / 0 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060200 [exp] 646 / 0 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060000 [exp] 614 / 0 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117100 [exp] 604 / 0 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.012G062200 [exp] 581 / 0 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 538 / 0 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098600 [exp] 523 / 0 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G219200 [exp] 444 / 2e-154 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G167100 [exp] 396 / 3e-135 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [flax] [poplar] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Lus10031972 pacid=23161292 polypeptide=Lus10031972 locus=Lus10031972.g ID=Lus10031972.BGIv1.0 annot-version=v1.0 ATGAGATTCGCAGCAGCCTTAATCTTCTTTCTGGGGCTTTTCACTTGCACAGCTGCATATGATCCATTGGATCCTAATGGGAACATTACTGTCAAATGGG ACATCGTATCTTGGACTGCGGATGGTTACACAGCAGTTGTAACAATTAACAACTTCCAGCTATTCAGGCACATAATGAATCCAGGGTGGAGTCTAGGATG GACATGGGCAAAGAAAGAAGTAATATGGTCAATGAATGGAGCACAAGCAACAGAGCAAGGAGATTGTTCCAAGTTCAAAGGAAACATACCTCACAGCTGC AAGAAATCCCCAACAGTTGTGGACTTGCTCCCTGGGGCTCCTTACAATCAGCAGTTTACAAACTGCTGCAAAGGTGGAGTGGTTGGAGCTTGGGGGCAAG ATCCATCAGCTGCTGTGTCCCAGTTCCAGATTAGTGTTGGCCAAGCTGGTACTTCTAACAAGACTGTCAAGGTTCCCAAGAACTTCACCTTGCTTGGTCC GGGTCCAGGTTACACATGTGGCCCTGCTAAGATTGTCCCTCCAACCAAGTTCCTCACTCCTGATTTCCGTCGCAAAACTCAGGCACTCATGACTTGGAAT GTTACCTGCACATACTCTCAGTTTCTGGCAAGGAAACACCCAAGCTGTTGTGTCTCCATATCATCTTTCTACAACGACACAATCACTCCTTGTCCTTCCT GCGCTTGTGGCTGCGAAAGAAAGGACACTTGCGTCAATAGGGACGCAAAGATACTGAGCGTGGCCGGAATCCACACGCCGAGAAAGGACAACACGTCGTC AATGCTGCAGTGCACACACCATATGTGCCCCGTTAGAATCCACTGGCATGTCAAAACCAACTACAAGGAATACTGGCGAGCCAAGATCTCAATCACAAAC TTCAACTACCGAATGAACTACTCGCTCTGGACCTTAGTTGTCCAGCATCCAAATCTCAACAATGTCACCCAAGTCTTCAGCTTCGGCTACAAGCCTCTGG TTCCCTACGAATCCATAAATGACACGGGGATGTTCTACGGGATGAAGTACTTCAACGACGTGGTGATGCAAGCAGGGGCGCTAGGGAATGTGCAGTCGGA GGTTTTGTTGCAGAAGGACTTGAACACTTTCAGTTTAAGCCAAGGGTGGGCGTTTCCACGCAAGGTTTACTTTAATGGAGATGAATGCATTTTGCCCCCA CCAGATACATACCCTTTTCTACCAAATTCGGCGCGTAGATTTGGTCTGTTGTTGCCATTCTGGATTACTCCGATTTCTGGGTTCTTGTTCGTGTTCTTCT GCTTCTGGTAA
AA sequence Show only first row Show all	>Lus10031972 pacid=23161292 polypeptide=Lus10031972 locus=Lus10031972.g ID=Lus10031972.BGIv1.0 annot-version=v1.0 MRFAAALIFFLGLFTCTAAYDPLDPNGNITVKWDIVSWTADGYTAVVTINNFQLFRHIMNPGWSLGWTWAKKEVIWSMNGAQATEQGDCSKFKGNIPHSC KKSPTVVDLLPGAPYNQQFTNCCKGGVVGAWGQDPSAAVSQFQISVGQAGTSNKTVKVPKNFTLLGPGPGYTCGPAKIVPPTKFLTPDFRRKTQALMTWN VTCTYSQFLARKHPSCCVSISSFYNDTITPCPSCACGCERKDTCVNRDAKILSVAGIHTPRKDNTSSMLQCTHHMCPVRIHWHVKTNYKEYWRAKISITN FNYRMNYSLWTLVVQHPNLNNVTQVFSFGYKPLVPYESINDTGMFYGMKYFNDVVMQAGALGNVQSEVLLQKDLNTFSLSQGWAFPRKVYFNGDECILPP PDTYPFLPNSARRFGLLLPFWITPISGFLFVFFCFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10031972 [exp]	0	1
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10035131 [exp]	1.4	0.9543
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10019774 [exp]	1.7	0.9359
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10013503 [exp]	2.0	0.9330
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10007975 [exp]	2.4	0.9377
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Lus10016790 [exp]	3.2	0.9260
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002986 [exp]	3.5	0.8903
AT5G56460			Protein kinase superfamily pro...		Lus10010319 [exp]	3.7	0.8794
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036114 [exp]	5.5	0.9184
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002985 [exp]	5.7	0.9140
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10030975 [exp]	5.9	0.9172

Compare expression of checked genes

Lus10031972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.