Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13680 436 / 6e-154 PLC-like phosphodiesterases superfamily protein (.1) AT5G67130 386 / 4e-133 PLC-like phosphodiesterases superfamily protein (.1) AT1G49740 383 / 6e-133 PLC-like phosphodiesterases superfamily protein (.1) AT4G36945 354 / 8e-121 PLC-like phosphodiesterases superfamily protein (.1) AT3G19310 347 / 1e-117 PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035130 [exp] 701 / 0 AT1G13680 437 / 7e-154 PLC-like phosphodiesterases superfamily protein (.1) Lus10012600 [exp] 593 / 0 AT1G13680 440 / 5e-155 PLC-like phosphodiesterases superfamily protein (.1) Lus10000649 [exp] 455 / 7e-161 AT1G13680 435 / 4e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10014072 [exp] 377 / 2e-129 AT1G49740 522 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10019843 [exp] 373 / 6e-128 AT1G49740 524 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10009368 [exp] 372 / 3e-127 AT5G67130 580 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10019339 [exp] 349 / 4e-118 AT4G36945 462 / 1e-161 PLC-like phosphodiesterases superfamily protein (.1) Lus10012665 [exp] 231 / 2e-75 AT1G49740 273 / 4e-92 PLC-like phosphodiesterases superfamily protein (.1) Lus10000092 [exp] 156 / 3e-46 AT4G36945 188 / 2e-58 PLC-like phosphodiesterases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G144900 [exp] 537 / 0 AT1G13680 462 / 2e-163 PLC-like phosphodiesterases superfamily protein (.1) Potri.017G098900 [exp] 533 / 0 AT1G13680 450 / 3e-159 PLC-like phosphodiesterases superfamily protein (.1) Potri.004G117500 [exp] 516 / 0 AT1G13680 447 / 8e-158 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G139400 [exp] 385 / 7e-133 AT4G36945 505 / 4e-179 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G140100 [exp] 385 / 3e-132 AT5G67130 572 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.004G140200 [exp] 379 / 3e-130 AT1G49740 548 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045200 [exp] 375 / 8e-129 AT4G36945 520 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045700 [exp] 374 / 4e-128 AT5G67130 591 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.009G100332 [exp] 243 / 2e-79 AT1G49740 341 / 9e-118 PLC-like phosphodiesterases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031973 pacid=23161077 polypeptide=Lus10031973 locus=Lus10031973.g ID=Lus10031973.BGIv1.0 annot-version=v1.0 ATGTACTGGGTGCTGGCGGCGGCGGCAATATTCCTGAGTTGTTGTTCAACCGTAGCGTTTGGATGCTCGTCGGACCAAGATTGCGGAGTCGGACGGCACT GTTTCAGTTGCTTGGACACGGCGGAGTCGGGCTCTGTCTGTGTGAGATCCACTGCCACTAACCAGTTCCAGCTCCTGAACAATTCTCTGCCGTTCAACAA ATACGCATTCTTAACAACACACAACGCATTCGCCATCGACAATTATCCGCTGCACACTCCGATTCCTCGAGTCACCGAAACCAATCAGGAAGACAGCATC ACTGAACAGCTAAATAACGGCGTCCGGGCATTGATGCTCGACACATACGACTTCCAAGGCGACGTCTGGATGTGCCATTCCTTCGGTGGAAACTGCCATG ACTTCACTGCATTTGGTCCAGCAATTGACTACCTGAGGGAGATTGAGGCGTTCATGTCTGCAAACCCATCAGAGGTTGTCACCATCATCCTGGAAGACTA TGTTCATGCTGCCAATGGGTTGACTAAAGTCTTCACCGATGCCGGCCTGATGAAGTACTGGTTCCCTGTCTCGAATATGCCTAAGAACGGCTCCGGAGAC TGGCCGTTGGTTAGTGACATGGTGAAGAATAACCAGAGGCTGGTTGTGTTCACTTCTGTACAGTCTAAGGAATCTGGTGAAGGGATCGCTTACCAGTGGA CTTACATGGTTGAGAATCAATATGGGGATGGAGGGATGAAGACAGGGAGCTGTCCGAACAGAGCGGAATCAGCACCGATGTACGACAAAACGAAGTCGCT GGTGCTGATGAACTTCTTCAGGTCAGTACCGATGGAGGACTTGGCTTGTGGGGATAACTCTGGGAGTTTGATGGACATGGTTACGACCTGTGAGGTTGCT GCTGGGAATAGATGGGCTAATTTCCTTGCTGTCGATTACTACAAGAGAAGTGAAGGTGGAGGAGCGTTCCAAGCTGTGGATACTCTTAACGGGAAGCTAC TATGCGGCTGCGATGATGTTCATGGATGTGTGGTAAGCCGTCGATACCAATAG
AA sequence Show only first row Show all	>Lus10031973 pacid=23161077 polypeptide=Lus10031973 locus=Lus10031973.g ID=Lus10031973.BGIv1.0 annot-version=v1.0 MYWVLAAAAIFLSCCSTVAFGCSSDQDCGVGRHCFSCLDTAESGSVCVRSTATNQFQLLNNSLPFNKYAFLTTHNAFAIDNYPLHTPIPRVTETNQEDSI TEQLNNGVRALMLDTYDFQGDVWMCHSFGGNCHDFTAFGPAIDYLREIEAFMSANPSEVVTIILEDYVHAANGLTKVFTDAGLMKYWFPVSNMPKNGSGD WPLVSDMVKNNQRLVVFTSVQSKESGEGIAYQWTYMVENQYGDGGMKTGSCPNRAESAPMYDKTKSLVLMNFFRSVPMEDLACGDNSGSLMDMVTTCEVA AGNRWANFLAVDYYKRSEGGGAFQAVDTLNGKLLCGCDDVHGCVVSRRYQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13680			PLC-like phosphodiesterases su...		Lus10031973 [exp]	0	1
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10018230 [exp]	1.4	0.9260
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10006065 [exp]	2.4	0.9212
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10033052 [exp]	2.8	0.9233
					Lus10003629 [exp]	3.2	0.9087
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017766 [exp]	4.2	0.8843
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10030975 [exp]	4.9	0.9103
AT5G25820			Exostosin family protein (.1)		Lus10014424 [exp]	5.1	0.8593
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017765 [exp]	6.5	0.8992
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10020247 [exp]	7.7	0.8672
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032074 [exp]	9.2	0.9026

Compare expression of checked genes

Lus10031973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.