Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19340 704 / 0 Protein of unknown function (DUF3754) (.1) AT5G13940 520 / 4e-178 aminopeptidases (.1) AT2G46915 87 / 5e-18 Protein of unknown function (DUF3754) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035127 [exp] 920 / 0 AT3G19340 749 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10012581 [exp] 821 / 0 AT3G19340 787 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10041512 [exp] 783 / 0 AT3G19340 756 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10012584 [exp] 528 / 0 AT3G19340 589 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10041510 [exp] 509 / 4e-178 AT3G19340 579 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10004371 [exp] 158 / 1e-41 AT5G47240 410 / 2e-139 nudix hydrolase homolog 8 (.1) Lus10010092 [exp] 77 / 9e-15 AT2G46915 704 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10007214 [exp] 74 / 1e-13 AT2G46915 699 / 0.0 Protein of unknown function (DUF3754) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G237700 [exp] 750 / 0 AT3G19340 813 / 0.0 Protein of unknown function (DUF3754) (.1) Potri.014G144300 [exp] 725 / 0 AT3G19340 771 / 0.0 Protein of unknown function (DUF3754) (.1) Potri.014G144500 [exp] 616 / 0 AT3G19340 640 / 0.0 Protein of unknown function (DUF3754) (.1) Potri.002G183900 [exp] 82 / 2e-16 AT2G46915 744 / 0.0 Protein of unknown function (DUF3754) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12576 [flax] [poplar] DUF3754 Protein of unknown function (DUF3754)
Representative CDS sequence Show only first row Show all	>Lus10031975 pacid=23161326 polypeptide=Lus10031975 locus=Lus10031975.g ID=Lus10031975.BGIv1.0 annot-version=v1.0 ATGAAGAAGAGCAATGGCGGAAGTGGGGTGGCGAAGAAGAAGAAGAGGGAAGTGATTCGTCTGGAGAAGGAATCTGTCATTCCAATCCTGAAACCTAGGC TCATAATGACCTTGGCCAACCTCATTGAACAAAGCTCTGACCGTGACGAGTTCCTGAAGCTCTGCAAGCGAGTTGAGTACACCATCCGAGCTTGGTACCT TCTCCAGTTTGAAGATCTCATGCAACTGTATTCCCTCTTCGACCCTGTTTCTGGAGGGCAGAAATTGAAACAGCAGCATCTTACCCCCGACGATATCCAC AATCTTGAACAGAATTTCCTTGGCTACTTGTTTCAGGTGATGACTAAGAGTAACTTCAAAATAGCAACTGATGAGGAGATTGAAGTTGCCCTCTCAGGCC AGTATCTTTCTAATCTCCCTATCAAAGTTGACGAGTCTAAGCTTGACAAGAAACTTCTGAGCAGTTATTTCGAGAATCATCCTCATCCCCACCTTCCGGA TTTCGCAAACAAGTATGTTATCTTTCGTCGTGGCATTGGAATTGATCAGACTACTGGCTATTTCTTCATGGAGAAAGTAGACATGCTTATTGGTCGTTTT TGGGCATATCTGCTTAGGCTTACAAGGCTGGATAAACTTTTCTTGAGAAAGCCAAAAAAACAGCGGAGAATGCTGACTGTGGATGATGATGATGACGTTA ATGCTGAGGAAAACATAGACAACTTTTGTGTGGAACGTATCCGCCTTGAGAATATGGAACTTAGTGCAGGGAGCTTACTGAGCAATACTACAATTCAAGA ACCTACATTTGACAGAATAATCGTCCTTTATCGGCGAGCAAGTACCAAGGAGAAACCTGATCATGGTATATACGTGAAACATTTCAAAAACATTCCAATG GCTGATATGGAAATAGTTCTTCCAGAAAAGAGAAATCCTGGGTTAACTCCAAAGGACTGGGTCACCTTCCTAGTTTCTGCTTTAGTTGGACTGGTTGCAG TGGTTAGTTCAATTGAATCTCCAAAGGATGATCTCTGGGTTATGTTGGCTGTCCTTTCAACAGTTGTTGGTTACTGTGCCAAGACATACTTCACTTATCA GCAAAACATGGCTGCATATCAGAACTTGATCACCCAGTCTATGTATGATAAACAGTTAGACAGTGGAAGGGGCACACTTCTCCACCTCTGTGACGATGTG ATTCAGCAGGAAGTGAAAGAGGTAATACTTTCATTCTACATACTGATGGAACAAGGCAAGGCTACCAGGCAGGATTTGGATTTGCGATGTGAGGAACTGC TGACAGAAGAGTTCGGGGAAAGCTGCAATTACGACGTAGACGACGCAGTTGACAAGTTGGAGAAGCTAGGCATTGTTTCCAGGGATTCTTTGTCGAGATA TTACTGCGTGGGACTGAAGAGGGCGAACGAGATAATCGGGACTACAACTGAAGAGCTTGTGCTGAAAGCCAGGCAAGGTCTTAGGACCCAATGA
AA sequence Show only first row Show all	>Lus10031975 pacid=23161326 polypeptide=Lus10031975 locus=Lus10031975.g ID=Lus10031975.BGIv1.0 annot-version=v1.0 MKKSNGGSGVAKKKKREVIRLEKESVIPILKPRLIMTLANLIEQSSDRDEFLKLCKRVEYTIRAWYLLQFEDLMQLYSLFDPVSGGQKLKQQHLTPDDIH NLEQNFLGYLFQVMTKSNFKIATDEEIEVALSGQYLSNLPIKVDESKLDKKLLSSYFENHPHPHLPDFANKYVIFRRGIGIDQTTGYFFMEKVDMLIGRF WAYLLRLTRLDKLFLRKPKKQRRMLTVDDDDDVNAEENIDNFCVERIRLENMELSAGSLLSNTTIQEPTFDRIIVLYRRASTKEKPDHGIYVKHFKNIPM ADMEIVLPEKRNPGLTPKDWVTFLVSALVGLVAVVSSIESPKDDLWVMLAVLSTVVGYCAKTYFTYQQNMAAYQNLITQSMYDKQLDSGRGTLLHLCDDV IQQEVKEVILSFYILMEQGKATRQDLDLRCEELLTEEFGESCNYDVDDAVDKLEKLGIVSRDSLSRYYCVGLKRANEIIGTTTEELVLKARQGLRTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19340			Protein of unknown function (D...		Lus10031975 [exp]	0	1
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10020726 [exp]	2.0	0.8938
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10003488 [exp]	3.5	0.8899
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10017377 [exp]	4.2	0.8852
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10029804 [exp]	4.2	0.8936
AT2G16980			Major facilitator superfamily ...		Lus10025087 [exp]	5.7	0.8739
AT5G64380			Inositol monophosphatase famil...		Lus10020433 [exp]	5.8	0.9027
AT5G06370			NC domain-containing protein-r...		Lus10004198 [exp]	6.0	0.8891
AT2G20100	bHLH		basic helix-loop-helix (bHLH) ...		Lus10023669 [exp]	8.0	0.8876
AT1G05170			Galactosyltransferase family p...		Lus10027185 [exp]	10.4	0.8450
AT3G27390			unknown protein		Lus10032110 [exp]	10.6	0.8754

Compare expression of checked genes

Lus10031975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.