Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02130 522 / 4e-172 TOAD2, RPK2, CLI1 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) AT1G69270 386 / 1e-126 RPK1 receptor-like protein kinase 1 (.1) AT5G63930 327 / 9e-99 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 317 / 5e-95 Leucine-rich receptor-like protein kinase family protein (.1) AT1G55610 304 / 6e-90 BRL1 BRI1 like (.1.2) AT1G31420 290 / 3e-89 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT3G13380 299 / 4e-88 BRL3 BRI1-like 3 (.1) AT3G49670 293 / 9e-87 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G02220 292 / 2e-86 ATPSKR1 phytosulfokin receptor 1 (.1) AT2G35620 282 / 2e-86 FEI2 FEI 2, Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035126 [exp] 848 / 0 AT3G02130 450 / 4e-142 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10010087 [exp] 550 / 0 AT3G02130 962 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10007206 [exp] 547 / 0 AT3G02130 964 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10026666 [exp] 439 / 1e-145 AT3G02130 555 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10037083 [exp] 425 / 2e-140 AT3G02130 569 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10036899 [exp] 425 / 3e-140 AT3G02130 559 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10004646 [exp] 415 / 3e-136 AT3G02130 552 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10031689 [exp] 312 / 1e-93 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10031108 [exp] 310 / 3e-93 AT5G62230 1422 / 0.0 ERECTA-like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G144600 [exp] 865 / 0 AT3G02130 785 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.017G094400 [exp] 551 / 0 AT3G02130 1405 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.004G120500 [exp] 549 / 0 AT3G02130 1375 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.008G096400 [exp] 522 / 2e-172 AT3G02130 1140 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.011G139700 [exp] 328 / 5e-99 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G169600 [exp] 306 / 1e-90 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.015G132200 [exp] 302 / 2e-90 AT5G62230 1404 / 0.0 ERECTA-like 1 (.1.2) Potri.012G130400 [exp] 301 / 5e-90 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2) Potri.001G075000 [exp] 305 / 8e-90 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.005G198000 [exp] 301 / 2e-89 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10031976 pacid=23161255 polypeptide=Lus10031976 locus=Lus10031976.g ID=Lus10031976.BGIv1.0 annot-version=v1.0 ATGGTGTATTTCAACATCAGTCAGAACCATTTCTCTGGTGTTCTCCCGGCCTTCCCAAATGGTAGGTCGTGTGATGGTAGCATGATTGGCTACGGCAGCA GCTTAGATGTGGAGGATGTAAGATTTGCGTACTCTAACATCCCTGCTTGGGGGTCTCAGATGAATGCACTTCTTCTCGAGGACGGAAAGAATGATGATGA GGAGTTCATGGTCATCCATGATCTCAGCTGGAATAAACTGAGTGGCGCCATGCCAGCCTTCTCCATAAGTGATGGTTTCTTAGCAGCAGCTAATAGGAAA ACTGCTTACCGGTTGCTTTTGAACGAGAACATGTTCAATGGATCCTTTCCTGGTGAATTAGTACCGCAATGCAATGATCTAATCGGTTTGTCTGTTAACT TGAGTGCCAATGATCTCTCCTTTAGTATTCAGCATCTGCAGCTCCTCAACTGTTCCAAGGTTAAGGAGTTTGAAGCAGCTCAAAACCATATAGATGGTTC ACTGAGTCCTACCACCATTGGCAATCTGGTAAAGCTTCAGTCTTTTGACTTGAGGGGAAACAGTCTCACTGGTTCTATACCTGCTGAATTGGGTGCTATG AAACTCATGAAGTCCATGCTTCTTGGAAGCAACAATTTGACTGGAGACATTCCAGCTCAGCTAGGTGAAATGACTTCTCTTGTGACCCTAGATCTCTCTC ACAATTTTATCACAGGATCGATCCCTGGAAGTCTAGCAGATGGGAAGAGCATGGAAATTATGCTGCTTAACAACAATCGTCTCTCTGGAGAGATACCTTC ATCATTTTCCAATCTTTCCAACCTTAGAGAGCTAGATGTTTCTTATAATAACCTCTCTGGCCCTATACCGCTTCTCCATTACCGCTTTGATTGCAATCAA TTCACAGGGAACACATACTTGGTTACGTGTTCAGAGCCAATGGCGAGCTCTCCGAATTCATCGATAGAAGAAAGTCATGTGATGCAGCGTCGGAAGAATA ACAGTCGGGTCTTTTTGATTGCGTTGATCACTTCTATCTCTGTCATACTTGTGGTCTCGTTGGTTGTGGTTGTATGGAAGCTGTATCGAAAGAGAACATT GATAAGCCAGCAGCAAGGTAGCTTGAGAGGGAAAGTAGTTGTGACGTTTGCAGATGCTCCAGCTGAGTTGAACTATGATAATGTGTTGAAGTCAACTGGC AACTTCAGTGTTAGGTATCTGATTGGCACGGGTGGCTTTGGGGCAACTTACAAAGCAGAGATAGTTCCTGGCTACTTTGTTGCTGTTAAGAGGCTGTCAA TTGGTAAGATTCAGGGGAGTAAACAGTTTGATGCGGAGATCAGAACGTTGGGGACAATCAGGCACAAGAATCTTGTAACTCTGATTGGCTATTATGTTGG AGAATCCGAAATGCTGTTGATCTATAATTATCTTTCTGGTGGAAATCTGGAGACCTTCATACATGACAGGTCTGGCAAAAATAGACAGTGGTCAGTGATT TACAAAATAGCACTCGACATAGCGCAGTCGCTGACTTATCTCCACTACTCGTGTGTGCCGAAGATACTCCATCGGGACATCAAACCTAGCAACATATTAC TGGACGACGAGCTCAATGCTTATCTCTCCGATTTCGGCTTAGCCAGGCTGTTGGAAGTCTCGCAAACTCATGCCACAACCGATGTTGCTGGAACGTTCGG GTATGTCGCGCCAGAGTATGCAACCACGTGCAGGGTCTCCGACAAGTCGGATGTTTACAGCTTCGGTGTGGTTCTGTTGGAGTTGATGTCGGGAAAGAGA TCGCTCGACCCTTCATTTGCAGAATATGGAAATGGATTCAACATTGTGGCGTGGGCCAAGCTGTTGATTAAGGAAGGACATTCATCAGAGCTTTTCTCTG CAGAGCTGTGGGAAACTGGCCCCAAGGAGAATTTACAAGGGATGTTAAAGCTTGCTTCAGCTTGTACTGTCGAATCGCTTACTGTTCGGCCATCCATGAA GCATGTCCTCGAGAAACTGAAACACTTGAAATACTGA
AA sequence Show only first row Show all	>Lus10031976 pacid=23161255 polypeptide=Lus10031976 locus=Lus10031976.g ID=Lus10031976.BGIv1.0 annot-version=v1.0 MVYFNISQNHFSGVLPAFPNGRSCDGSMIGYGSSLDVEDVRFAYSNIPAWGSQMNALLLEDGKNDDEEFMVIHDLSWNKLSGAMPAFSISDGFLAAANRK TAYRLLLNENMFNGSFPGELVPQCNDLIGLSVNLSANDLSFSIQHLQLLNCSKVKEFEAAQNHIDGSLSPTTIGNLVKLQSFDLRGNSLTGSIPAELGAM KLMKSMLLGSNNLTGDIPAQLGEMTSLVTLDLSHNFITGSIPGSLADGKSMEIMLLNNNRLSGEIPSSFSNLSNLRELDVSYNNLSGPIPLLHYRFDCNQ FTGNTYLVTCSEPMASSPNSSIEESHVMQRRKNNSRVFLIALITSISVILVVSLVVVVWKLYRKRTLISQQQGSLRGKVVVTFADAPAELNYDNVLKSTG NFSVRYLIGTGGFGATYKAEIVPGYFVAVKRLSIGKIQGSKQFDAEIRTLGTIRHKNLVTLIGYYVGESEMLLIYNYLSGGNLETFIHDRSGKNRQWSVI YKIALDIAQSLTYLHYSCVPKILHRDIKPSNILLDDELNAYLSDFGLARLLEVSQTHATTDVAGTFGYVAPEYATTCRVSDKSDVYSFGVVLLELMSGKR SLDPSFAEYGNGFNIVAWAKLLIKEGHSSELFSAELWETGPKENLQGMLKLASACTVESLTVRPSMKHVLEKLKHLKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10031976 [exp]	0	1
AT4G03340			Core-2/I-branching beta-1,6-N-...		Lus10031626 [exp]	1.7	0.8003
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Lus10033386 [exp]	6.0	0.7771
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Lus10013052 [exp]	6.2	0.7791
AT3G07630		AtADT2, ADT2	Arabidopsis thaliana arogenate...		Lus10036135 [exp]	8.8	0.7396
AT2G20880	AP2_ERF	AtERF53	ERF domain 53, Integrase-type ...		Lus10018578 [exp]	12.4	0.7325
AT1G74860			unknown protein		Lus10036649 [exp]	13.5	0.7510
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10038117 [exp]	15.0	0.7356
AT2G13100		AtG3Pp5	glycerol-3-phosphate permease ...		Lus10040002 [exp]	15.6	0.7660
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10031419 [exp]	16.0	0.7602
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10014176 [exp]	25.1	0.7456

Compare expression of checked genes

Lus10031976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.