Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19330 248 / 4e-79 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) AT3G19250 209 / 3e-64 Protein of unknown function (DUF677) (.1) AT3G49070 91 / 6e-20 Protein of unknown function (DUF677) (.1) AT1G20180 57 / 9e-09 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035125 [exp] 267 / 6e-89 AT3G19330 183 / 1e-56 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Lus10005612 [exp] 84 / 2e-17 AT1G20180 268 / 1e-86 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10017286 [exp] 79 / 8e-16 AT1G20180 265 / 1e-85 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10039258 [exp] 59 / 8e-10 AT3G49070 168 / 1e-50 Protein of unknown function (DUF677) (.1) Lus10017348 [exp] 57 / 1e-08 AT1G20180 255 / 4e-81 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10010144 [exp] 55 / 5e-08 AT1G20180 260 / 4e-83 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G240200 [exp] 284 / 6e-93 AT3G19330 311 / 9e-104 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Potri.002G067300 [exp] 96 / 5e-22 AT1G20180 130 / 2e-34 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.015G147400 [exp] 96 / 9e-22 AT3G49070 253 / 1e-80 Protein of unknown function (DUF677) (.1) Potri.005G193000 [exp] 91 / 5e-20 AT1G20180 155 / 8e-44 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.002G018200 [exp] 67 / 5e-12 AT1G20180 288 / 2e-94 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.005G243800 [exp] 56 / 1e-08 AT1G20180 252 / 2e-80 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF05055 [flax] [poplar] DUF677 Protein of unknown function (DUF677)
Representative CDS sequence Show only first row Show all	>Lus10031977 pacid=23161312 polypeptide=Lus10031977 locus=Lus10031977.g ID=Lus10031977.BGIv1.0 annot-version=v1.0 ATGTCTGAACCAACTTGGATCCGTAGTCACACTATTTTCTTGCTTGCAGGGATACCCATGGACGGTTCGACGACTTCCCCGACAAGCAGCCGGACATCCC CTCTCAATCTTACTCAGGAATACATCTCCGCGCTCCAGAACCAATCCTACAAGGACATGTGGTCCAGAATCCACCACCCCGATCACCAAACCCACCTCGT TGACGACCTCCGATCCGCTCCCGACGACGACCCTTCACCCAATTTCCTCCATTTAGCCGACGTACTTCACCCGGACAAAGAGATAGTCAACGAGGCACTC CTCCACGCCAAACCCTCAACACTAACTTCCCTCGTCTCAACTTACTTCTCCCACAGCGAACAAACCACCAAACTCTGCCTCCACCTCCACCGTAGCGTCT ACAACGCCAGAGCCATGTACCACCCTCTCCACCGTCTCCTCCACGTCCTTAACCTCGACTCCTCCTCCAACATCAATCAATCCCAATGCGACGCGGCATT CGACGCATTCCTCCACTTCGACAAATTCGGCAACCCGTTCCCGTCCCCTGACGACGACTCCCACAACTTCCAGGAAATGCGCCGCTGCTTCACTCAGCTA AGACACCAGCTGGACCGCCGGCTCCACAAGTCCCGTTCAAGGATCCGTCTAGCTCGCCAGGCCACCATTGCTTCCGTGGTCTGTGTAATAGGCTCGGTGG TAGCAGTGGCTGAGGATCCGTCTTGCTCGCCGGGCCACCATTGCTTCGGTGCTTGCCCGCCAGCCTTGTGCAGTACTGCTGCTTACCTGAAGCCTGGAAG CAGCAATCGATTCACTAGGAAAGAGTTTGCACATGTGAAGCAGCTGGATGCAGCTGCTAGGGGTGCGTATGTGCTGAACAATGACCTCGACACAATCGAC CGGCTTGCAGCGAGGCTGTATGCTGCCGTGGAAGACGACAGGTTCTTGATAAGGATTGGGTTGGAGAGAGGGAAGGAGGTGCACCCGACGATGGAGGTGC TGAAGCAGCTGAAGAAGAACCAGTTGAATTTGGTGCCCCAGCTGGGTGATCTCGAGGAACACATCTGTCTCTGCTTCAACGCTGTGAACAGAGCGAGGTC ACTGCTGCTTCAGGAGATTCATGAGTATCATCAAACCCCGCAATCCTGA
AA sequence Show only first row Show all	>Lus10031977 pacid=23161312 polypeptide=Lus10031977 locus=Lus10031977.g ID=Lus10031977.BGIv1.0 annot-version=v1.0 MSEPTWIRSHTIFLLAGIPMDGSTTSPTSSRTSPLNLTQEYISALQNQSYKDMWSRIHHPDHQTHLVDDLRSAPDDDPSPNFLHLADVLHPDKEIVNEAL LHAKPSTLTSLVSTYFSHSEQTTKLCLHLHRSVYNARAMYHPLHRLLHVLNLDSSSNINQSQCDAAFDAFLHFDKFGNPFPSPDDDSHNFQEMRRCFTQL RHQLDRRLHKSRSRIRLARQATIASVVCVIGSVVAVAEDPSCSPGHHCFGACPPALCSTAAYLKPGSSNRFTRKEFAHVKQLDAAARGAYVLNNDLDTID RLAARLYAAVEDDRFLIRIGLERGKEVHPTMEVLKQLKKNQLNLVPQLGDLEEHICLCFNAVNRARSLLLQEIHEYHQTPQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19330			Protein of unknown function (D...		Lus10031977 [exp]	0	1
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10009747 [exp]	2.2	0.8738
AT5G59350			unknown protein		Lus10023421 [exp]	3.7	0.8247
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10042679 [exp]	5.7	0.8589
AT1G69910			Protein kinase superfamily pro...		Lus10036691 [exp]	6.0	0.8429
AT1G12050			fumarylacetoacetase, putative ...		Lus10003798 [exp]	7.3	0.8266
AT4G23740			Leucine-rich repeat protein ki...		Lus10032351 [exp]	14.5	0.8412
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10002482 [exp]	17.0	0.8065
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10010235 [exp]	17.2	0.8620
AT5G17210			Protein of unknown function (D...		Lus10010077 [exp]	17.9	0.8124
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Lus10016804 [exp]	20.3	0.8062

Compare expression of checked genes

Lus10031977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.