Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26590 1015 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G55930 1014 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) AT4G10770 790 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT1G09930 775 / 0 ATOPT2 oligopeptide transporter 2 (.1) AT5G53520 766 / 0 ATOPT8 oligopeptide transporter 8 (.1) AT4G27730 766 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT4G16370 747 / 0 ATOPT3 oligopeptide transporter (.1) AT5G64410 738 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT5G53510 730 / 0 ATOPT9 oligopeptide transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022544 [exp] 1251 / 0 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016633 [exp] 1239 / 0 AT4G26590 1087 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022543 [exp] 1187 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022541 [exp] 1104 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016632 [exp] 1071 / 0 AT4G26590 981 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10042147 [exp] 1059 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032585 [exp] 1045 / 0 AT4G26590 1020 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032586 [exp] 1019 / 0 AT4G26590 1004 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10014885 [exp] 986 / 0 AT4G26590 961 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369700 [exp] 1095 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G370100 [exp] 1076 / 0 AT4G26590 1006 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.016G004800 [exp] 1018 / 0 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.006G003700 [exp] 893 / 0 AT4G26590 863 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.003G145500 [exp] 803 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.007G056900 [exp] 793 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.012G019500 [exp] 782 / 0 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.012G019700 [exp] 778 / 0 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.005G150400 [exp] 751 / 0 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.002G109300 [exp] 751 / 0 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10031978 pacid=23161092 polypeptide=Lus10031978 locus=Lus10031978.g ID=Lus10031978.BGIv1.0 annot-version=v1.0 ATGGGTGACGGGAAAATCAACGACGTCGACGACGATGATCATCGTTGTCCCAAGGTAGATGAAGAAGAAGAAAACGACAACCCGATCGAGCAGGTCAGGC TGACGGTTCCAATAACCGACGACCCGACCCAACCGACGTTGACATTCCGGACGTGGGTTCTGGGGATAAGCTCATGTGCACTTCTGGCATTCGTCAACCA GTTCTTCGGCTACCGCACCAATCAGCTCTCGGTTAGCTCAGTCACGGTTCAGATTCTGGTCCTGCCACTTGGCAAACTGATGGCTGTGACGCTTCCGACC ACTGTTCTTCGAGTTCCGTTGACCAAATGGTCGTTCTCGTTGAATCCAGGGCCGTTCAGTCTGAAAGAACACGTTCTCATCACCATCTTTGCTAACTGTG GATCCGGTGGTGTGTATGCTGTTCATATCATTACTTCCGTCAGAGCTCTGTACCATGGCACCATCAGTCCTCTGCCTGCTATGTTACTCGTACAAACCAC TCAGTTGCTGGGGTATGGATGGGCAGGAATCTTCAGAAGATTCCTAGTGGACTCACCATACATGTGGTGGCCAGCAAACTTGGTACAAGTTTCCCTCTTC AGGGCCTTACACGAAAAGGAAAAAAGATCAAAGGGATCACAAACCAGGCTGCAATTTTTCACCCTTGTTTTCATATCCAGCTTTGCTTACTACATCATCC CAAGTTACCTATTCCCTTCAATATCCACCATTTCTATCATCTGCTTGATATGGAAGAACTCAGTGAAAGCACAGCAGATTGGTTCCGGATTAAGTGGCCT AGGAGTTGGTTCGTTCGGACTCGACTGGTCCACTGTGGCCGCCTTCCTTGGAAGCCCCTTAGCCACACCCTTATTTGCAATCGTCAACACATTGGCCGGT TTCGCCTTGGTTGTCTACGTTATCATCCCGATTGCTTACTGGAACAATGCATACCATGCCAAGAGATTCCCCATTTTCTCCCCTAAGACATTTGACAGTC AGGGTGGAGTGTATGATATAGACAGGATTCTGAACAAGAGGACTTTCGAGATCGATTACGCTGCGTATGGAGGGTACAGCAAGCTTTACCTCAGTGCTAC GTTTGCGTTTGGGTATGGCATGACTTTTGCTGGTCTCATGGCTACCATTACACATGTTGCTCTGTTTGATGGCAAGACAATCTGGGAGCTTTGGAAGAAG ACGACAGGGGCGGTGAAGGATCGGTACAGTGATGTGCATGCAAGGCTGATGAAGAAGAACTATGAACAAGTACCTGAATGGTGGTTCTTAGTTGTGTTGG CTATCTCCATTGGTCTTGCCTTTCTTGCACTTGAAGGTTTCAATAAACAGCTGCAACTTCCATGGTGGGGACTCATCTTAGCATGTTGTATTGCACTTAC TTTCACCTTACCGATTGGGATTATTCAGGCGACAACAAATCAGCAAATAGGCCTAAACGTGATAACAGAGCTCATCATAGGATACATGTACCCAGGGAAG CCACTAGCAAACGTAGCATTCAAGACCTACGGCTACATCAGCATGTCACAAGCCTTGGGATTCCTCGCAGACTTCAAACTAGGCCACTACATGAAAATCC CACCCAAGATCATGTTTGCTGTCCAGACAGTCGGCACGCTCGTATCCTCAACGGTGTACTTCGGCACAGCCTGGTGGCTCCTCTCCTCAATAAAGAACAT ATGCGACACGGACTCCCTTCCGGAAGGGAGTCCGTGGACATGTCCAGGGGACAACGTCTTCTACAGCGCCTCGATAATTTGGGGCGTCATCGGCCCGCTC AGGATGTTCACCAAAAGCGGGGTGTACCCGGACATGAACTGGTTCTTCCTCATAGGAGCAGTAGCTCCCGTGCCTGTATGGCTGCTGTCAAGGAAATACC CGGAGAGGAAGTGGATCAAGCTGATCCACATGCCTCTGGTATTCGCGGCCACCGCCAGCATGCCACCGGCTAGACCGGTGCACTACTGGAGTTGGGGAGC TGTTGGGGTGTTCTTCAACTACTATGTGTACAACAAGTATAAAGGATGGTGGGCTAGGCACACTTACATCCTGTCGGCCGCCATGGATGCTGGAGTTGCC TTCTTGGCTGTTTTGATTTACTTTGTTCTGCAGGATAAGAATATTTACGGTCCTAAATGGTGGGGGTTAGAAGGTGATGATCATTGCCCTTTGGCTACTT GCCCTACAGCCCCTGGAATGAATGTCACTGGTTGCCCCGTCTTCCATTGA
AA sequence Show only first row Show all	>Lus10031978 pacid=23161092 polypeptide=Lus10031978 locus=Lus10031978.g ID=Lus10031978.BGIv1.0 annot-version=v1.0 MGDGKINDVDDDDHRCPKVDEEEENDNPIEQVRLTVPITDDPTQPTLTFRTWVLGISSCALLAFVNQFFGYRTNQLSVSSVTVQILVLPLGKLMAVTLPT TVLRVPLTKWSFSLNPGPFSLKEHVLITIFANCGSGGVYAVHIITSVRALYHGTISPLPAMLLVQTTQLLGYGWAGIFRRFLVDSPYMWWPANLVQVSLF RALHEKEKRSKGSQTRLQFFTLVFISSFAYYIIPSYLFPSISTISIICLIWKNSVKAQQIGSGLSGLGVGSFGLDWSTVAAFLGSPLATPLFAIVNTLAG FALVVYVIIPIAYWNNAYHAKRFPIFSPKTFDSQGGVYDIDRILNKRTFEIDYAAYGGYSKLYLSATFAFGYGMTFAGLMATITHVALFDGKTIWELWKK TTGAVKDRYSDVHARLMKKNYEQVPEWWFLVVLAISIGLAFLALEGFNKQLQLPWWGLILACCIALTFTLPIGIIQATTNQQIGLNVITELIIGYMYPGK PLANVAFKTYGYISMSQALGFLADFKLGHYMKIPPKIMFAVQTVGTLVSSTVYFGTAWWLLSSIKNICDTDSLPEGSPWTCPGDNVFYSASIIWGVIGPL RMFTKSGVYPDMNWFFLIGAVAPVPVWLLSRKYPERKWIKLIHMPLVFAATASMPPARPVHYWSWGAVGVFFNYYVYNKYKGWWARHTYILSAAMDAGVA FLAVLIYFVLQDKNIYGPKWWGLEGDDHCPLATCPTAPGMNVTGCPVFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10031978 [exp]	0	1
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Lus10025585 [exp]	4.8	0.9496
AT5G03050			unknown protein		Lus10012904 [exp]	5.0	0.7883
					Lus10022658 [exp]	5.2	0.7832
AT4G27570			UDP-Glycosyltransferase superf...		Lus10027483 [exp]	7.2	0.7871
AT5G05070			DHHC-type zinc finger family p...		Lus10027274 [exp]	7.5	0.8536
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10014005 [exp]	9.2	0.8536
AT3G02960			Heavy metal transport/detoxifi...		Lus10015762 [exp]	10.6	0.8536
AT3G60730			Plant invertase/pectin methyle...		Lus10015877 [exp]	11.8	0.8536
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10016888 [exp]	13.0	0.8536
AT5G16100			unknown protein		Lus10004035 [exp]	13.8	0.6638

Compare expression of checked genes

Lus10031978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.