Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13950 348 / 6e-105 unknown protein AT1G02290 68 / 1e-11 unknown protein AT3G45830 67 / 4e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035121 [exp] 615 / 0 AT5G13950 292 / 1e-85 unknown protein Lus10018907 [exp] 74 / 3e-13 AT1G02290 210 / 3e-62 unknown protein Lus10028606 [exp] 69 / 1e-11 AT1G02290 206 / 7e-61 unknown protein Lus10036145 [exp] 61 / 6e-09 AT3G45830 1034 / 0.0 unknown protein Lus10018121 [exp] 60 / 9e-09 AT3G45830 803 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G237800 [exp] 459 / 5e-147 AT5G13950 556 / 0.0 unknown protein Potri.014G144100 [exp] 458 / 2e-146 AT5G13950 406 / 4e-127 unknown protein Potri.014G109600 [exp] 64 / 5e-10 AT1G02290 229 / 3e-68 unknown protein Potri.002G184000 [exp] 61 / 3e-09 AT1G02290 231 / 2e-69 unknown protein Potri.009G026100 [exp] 58 / 3e-08 AT3G45830 1059 / 0.0 unknown protein Potri.001G233800 [exp] 56 / 1e-07 AT3G45830 1075 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031980 pacid=23161136 polypeptide=Lus10031980 locus=Lus10031980.g ID=Lus10031980.BGIv1.0 annot-version=v1.0 ATGGCAGCTGATCAGTATAAAAAGCGTGTTAATGGTTCAAACACTGCTGGTTGTAGCTCCTGGGAACAGAACAGAGGGAAAAAGAAGAAATATGAACCTT CGAAAAATGATACGAATGCAAAATCTCACATATCCCTCGAGTGGGACAACCACAAAAACAGGGTGGTTGCTAAAAGGGAACAAATAGGCATCCGTCAGAG AGATTTGAGGTCAGTTTTGGTTTCTTCTAAACCAGCGACTCCAAATAGCTTGGCTGATGTTGTTACTGTTCCTCGAGATGTTTTTCAATTGGAGGATCTG ATGGAGGTGCTCTCGCCTGAGGTCTGGCAGACTTGCTTGTCACTGAAAGAGAGAAACTTTCTTATGAAGTTTCTACCTAAGGAGGTGGATGCAGATGAAG TTGTGGAAGATTTACTATCTGGGGAAACCTTTCATTTTGGAAATCCTTTTATCAGATGGAGCAGTTCACTTTGCTCGGGTAATCTTCACCCTGATGCCAT CCTTCATCAGGAACGGGCTCTCAGGGCTGCTAAGAAAGCATACTATGGGGAGATCCAGAATTACCATAATGACATGATCAGATTTTTGCAGACTCTGAAA GCAACATGCGAGAGTAGCAGGGATCCAGAAAATGAGGTTTTTCAGACAACATGCAGATCACGGAGGGATGCAGAGAGAAATACACTCTCGCTTGGATATG AAAGTAGATTTCTAGATAATGAAGAAAAGGTAGCAACGTCCGAGTCTTGCTCTTTAGTTGCGGAGGATAAAGGATGCAGCAGTGACAACCAGAATTCTTC CGTGAAGGGTGCACATCATGTTAAAAGAAATGAGAAAAGCTCATCAAAGGGGAATGACAAAAAACCATCGGCTGCTTGGGATGGTGAAGAATCAGGGAAA GTAGATAAGGTGCAGAAGCACAATATTCACCAGACTGATGGTTCCAAATACATGTCATACCTAAAGATAAGTAAGAAGCAGCACCAACTTGTGAAGAATA TGAAACAATCTGGTAAAAGCATTCAGTCCAATTCTCTTAACCGTGTACTGGGCGACCTTGCTACGTTGCATGTACAACCATATGCACAGTTTGTAAAAGA GGAAGAGAACAAGTTGCAGGAGCATTGGCTGCAGCTGGTAAACAAAGATCTTCCTGCTGCATATGTGAACTGGAGAGAAAGACAGTCACTAAGACAAGAA ATTATTAGGTCTTTAGTGGAGGACTTGAAACTACAAGGTCAAGAAAATGTTGAAAATAACGAAGATGAAAACTTGGAAGATTACAAAGATGAAGTGGAAG ATCAAGAACAAGAACGAGAAGAGGAATATGATGATCAAGAACGAGAAGAGGGATATGATGCTGAAGAACAAGAACGTGAAGAGGAATACGGTGGTCAAAA TGAAGACGGAGATGAGGAGGGAAAAGAAGAGATGGAATACCAGCAGCCAAGTGTTTCCTCACCTCAATGGGAAGCAGACTTACGTGACCAATTTGTGGAA GATGAGGAGAAAGAGAACCTTAATGATTATAATGGTGGAAGAGATAAAGAAGAAGAGTCTGATGTGGAGGGCGATGATGAAGCTAGGAGCCAAGAGTCCA ATCCTGAAGATGATGAAGAAACTGGCTCAGGCTCCCTTCAGTATCAGTCACCACAGCTTATCTCTTCGTTGGGTGCTCAAGGGTCTCCACAAGTGCTTTC TTTGGTAGGTAGTGATGCTGTTGATACAGTACATAGGAATACCTCCCCAGGTCACTCAAGGAGTGCAATCATGGCAGAGACCGTGGTTGGTCACGGAGTT CCTATATCCTCCAGCGTGGATGTCTGGTCGGCAGTCAGCATGCCACAGTCCTACTATGACTCTACTTCAAACTATACCCATGATCAGGATTACATATCTA CACAGGCTTTGATGGCTCAAAATCAAGCCAAAGACAAGCAGCACATCCAAATGGTTGATTTGGGATCTCATGTGCATGGAGATGCCAGGAGGGATTTGTT GCATGGACAGTCTGATGGGGGCTCGTTCAGCTCTTGCCCGAACCCTGACCGAAGTGGTCTACTTCAGTCACTGTTTAAAGGACAGGAGACTTCACCCTAC ACCCAGGAACAAAAGCAGGAAGCTTTAGATTTCCAGTCCCAGCGTAATGTTTTAATTGAAGGTGGGCATTTTAATGGGCACATTCATCCTTCTCTCCCAC TAGGGCAGGGTCTAAAGAGACACACAGAAGATTTCATGCAACAGAACTTGTCTCATGATGTTTATTCCTCTGTTGGTGGGTACATAAGCCCGAGACAGGA ACATGTCCAGCCGCATGTTAATCTTCATGACTGGAATGTAAATCCGGCTTCTGCTCGCCCACCAACCCAGTTCCCTTTACCGAGTCTGAACGGGGATGGT TTATTGAATCAGAACTGGTTTCCTGCTGATCACCACCAAGTCCGTGGTGGTTGGAACGGTTATGACACCAGCAGCAGCAGCAATGTCAGTAATCGAAACA TTGGCAGCAGTGCTGCTGATCAGACACTGTTTAGTGTTTTGTCGCAATGTAATCAGTTGCGGCCAAGTGGTAACCCTTTGGATTCATTAGTAGCTTCCAG TGGGCATCAGATGATGCTACCAAGGAACTACAATATGGTGGGTGGTGGTGGGATGGCTGGAGGTAGTACGCTACCGCTTGTTGGTATGCATACGCACGAT TACTTTACCGGACGCGAGGGAAGTGGTGGAGGAGGCTTGGTGATGCCGGAAGAAGCAGGATGGATGAACCTTGGAGGACACAGTAATGGTATTAGTAATA GTGGTAACATCAGTAGTAGTAATTCTGGGTTTCATGACCCAATGGGGAAACCGCCATACTTGAGGCCATGGCATCAGCAATGA
AA sequence Show only first row Show all	>Lus10031980 pacid=23161136 polypeptide=Lus10031980 locus=Lus10031980.g ID=Lus10031980.BGIv1.0 annot-version=v1.0 MAADQYKKRVNGSNTAGCSSWEQNRGKKKKYEPSKNDTNAKSHISLEWDNHKNRVVAKREQIGIRQRDLRSVLVSSKPATPNSLADVVTVPRDVFQLEDL MEVLSPEVWQTCLSLKERNFLMKFLPKEVDADEVVEDLLSGETFHFGNPFIRWSSSLCSGNLHPDAILHQERALRAAKKAYYGEIQNYHNDMIRFLQTLK ATCESSRDPENEVFQTTCRSRRDAERNTLSLGYESRFLDNEEKVATSESCSLVAEDKGCSSDNQNSSVKGAHHVKRNEKSSSKGNDKKPSAAWDGEESGK VDKVQKHNIHQTDGSKYMSYLKISKKQHQLVKNMKQSGKSIQSNSLNRVLGDLATLHVQPYAQFVKEEENKLQEHWLQLVNKDLPAAYVNWRERQSLRQE IIRSLVEDLKLQGQENVENNEDENLEDYKDEVEDQEQEREEEYDDQEREEGYDAEEQEREEEYGGQNEDGDEEGKEEMEYQQPSVSSPQWEADLRDQFVE DEEKENLNDYNGGRDKEEESDVEGDDEARSQESNPEDDEETGSGSLQYQSPQLISSLGAQGSPQVLSLVGSDAVDTVHRNTSPGHSRSAIMAETVVGHGV PISSSVDVWSAVSMPQSYYDSTSNYTHDQDYISTQALMAQNQAKDKQHIQMVDLGSHVHGDARRDLLHGQSDGGSFSSCPNPDRSGLLQSLFKGQETSPY TQEQKQEALDFQSQRNVLIEGGHFNGHIHPSLPLGQGLKRHTEDFMQQNLSHDVYSSVGGYISPRQEHVQPHVNLHDWNVNPASARPPTQFPLPSLNGDG LLNQNWFPADHHQVRGGWNGYDTSSSSNVSNRNIGSSAADQTLFSVLSQCNQLRPSGNPLDSLVASSGHQMMLPRNYNMVGGGGMAGGSTLPLVGMHTHD YFTGREGSGGGGLVMPEEAGWMNLGGHSNGISNSGNISSSNSGFHDPMGKPPYLRPWHQQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13950			unknown protein		Lus10031980 [exp]	0	1
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10011581 [exp]	2.2	0.8663
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10007064 [exp]	4.2	0.8526
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10024026 [exp]	4.6	0.8601
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018126 [exp]	7.6	0.8604
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10026574 [exp]	9.3	0.8116
AT5G05130			DNA/RNA helicase protein (.1)		Lus10039001 [exp]	13.3	0.7883
AT3G45830			unknown protein		Lus10018121 [exp]	13.9	0.8591
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10043200 [exp]	15.4	0.8293
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10042101 [exp]	15.5	0.8530
AT2G20790			clathrin adaptor complexes med...		Lus10034013 [exp]	16.5	0.8470

Compare expression of checked genes

Lus10031980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.