Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26710 274 / 1e-92 CCB1 cofactor assembly of complex C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035119 [exp] 412 / 4e-147 AT3G26710 301 / 2e-103 cofactor assembly of complex C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G463200 [exp] 304 / 3e-104 AT3G26710 291 / 6e-99 cofactor assembly of complex C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12046 [flax] [poplar] CCB1 Cofactor assembly of complex C subunit B
Representative CDS sequence Show only first row Show all	>Lus10031981 pacid=23161231 polypeptide=Lus10031981 locus=Lus10031981.g ID=Lus10031981.BGIv1.0 annot-version=v1.0 ATGGCGATGGCTGCAGCTGCAACTGCAACCGCCGGTACAAAGCTGAACTTGAAACCTCCACCACTCTCTTTCTACCATTGTTCATCCTCGCCATGTAAAC TTCATCACCATCACCACCGCCCATTTAGCAGCAGCACCAGAAAAAGACTGCAGCTCCGGTCATCTCTCCAAACTCTACCCCTCATCGTTTCGTCTCTACC GGCGCCGGAGTCTTTTTCCATCTACTCCGTCGCCGAGAGTAGCAGCTACTCTTTGGCTAGCTACTACACTTCGCTCGGCCTCTTCCTCATCTCCCTCCCC GGTCTATGGTCGCTTATCAAGCGCTCTGTTAAATCCAAGGTTGTGCAGAAGACATATACAGGCCAGAAACCACCAAACCAAGTCGCTGGAGAGATCCAAT CTTTCTTCACTCGCAACAATTTTGTGGTGGCCGATAGAGGAGAGACCATCACGTTTGAAGGAATGATGGTTCCGAATCGAGGCCAGGCTGCATTGCTTAC TTTCTGCACTTGCATCAGCCTTGCCAGCGTAGCCCTCGTCCTCACCATTACTTATCCGGACGTCGGCAGCAACTGGTTCTGGCTTACCATCTTCAGCCCT TTGGCGGGAGCATACTACTGGAGCAAAGCATCTAGGAAGGAGCAAATAAAGGTAAAGATGATTGTCGGAGAAGACAGCACCTTGCAAGAGGTCATCGTCC AAGGAGATGATCAGCAAGTTGAGCAAATGAGGAAGGAGCTAGAGCTGAATGAGAAAGGCATGATCTATGTGAAGGGAATTTTCGAGAGATAA
AA sequence Show only first row Show all	>Lus10031981 pacid=23161231 polypeptide=Lus10031981 locus=Lus10031981.g ID=Lus10031981.BGIv1.0 annot-version=v1.0 MAMAAAATATAGTKLNLKPPPLSFYHCSSSPCKLHHHHHRPFSSSTRKRLQLRSSLQTLPLIVSSLPAPESFSIYSVAESSSYSLASYYTSLGLFLISLP GLWSLIKRSVKSKVVQKTYTGQKPPNQVAGEIQSFFTRNNFVVADRGETITFEGMMVPNRGQAALLTFCTCISLASVALVLTITYPDVGSNWFWLTIFSP LAGAYYWSKASRKEQIKVKMIVGEDSTLQEVIVQGDDQQVEQMRKELELNEKGMIYVKGIFER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26710		CCB1	cofactor assembly of complex C...		Lus10031981 [exp]	0	1
AT1G20810			FKBP-like peptidyl-prolyl cis-...		Lus10016037 [exp]	1.7	0.9449
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Lus10030326 [exp]	1.7	0.9514
AT1G15980		PnsB1, NDH48, N...	Photosynthetic NDH subcomplex...		Lus10026086 [exp]	2.8	0.9455
AT3G53460		CP29	chloroplast RNA-binding protei...		Lus10023191 [exp]	4.0	0.9414
AT1G76760		ATY1, TRX-Y1	thioredoxin Y1 (.1)		Lus10028569 [exp]	5.1	0.9271
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Lus10042812 [exp]	5.8	0.9212
AT3G18890		AtTic62	translocon at the inner envelo...		Lus10042346 [exp]	5.9	0.9406
AT2G01755			unknown protein		Lus10005230 [exp]	6.0	0.9405
AT2G36145			unknown protein		Lus10022687 [exp]	7.9	0.9387
AT2G27680			NAD(P)-linked oxidoreductase s...		Lus10006267 [exp]	8.2	0.9056

Compare expression of checked genes

Lus10031981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.