Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30480 195 / 1e-57 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT5G13970 137 / 2e-35 unknown protein AT2G42580 73 / 2e-13 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT5G65160 72 / 7e-13 TPR14 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) AT3G58620 72 / 7e-13 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT1G53300 70 / 2e-12 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT1G62390 70 / 3e-12 CLMP1, Phox2 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT1G56090 67 / 3e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G56440 69 / 4e-12 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G54010 68 / 8e-12 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035116 [exp] 431 / 5e-147 AT5G13970 211 / 4e-64 unknown protein Lus10035117 [exp] 343 / 8e-115 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10029481 [exp] 78 / 8e-15 AT1G62390 889 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10039592 [exp] 78 / 1e-14 AT1G62390 888 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10028154 [exp] 75 / 1e-13 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10042854 [exp] 74 / 1e-13 AT1G53300 749 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10038106 [exp] 71 / 2e-12 AT2G25290 655 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10008035 [exp] 71 / 2e-12 AT2G25290 667 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10001927 [exp] 69 / 5e-12 AT2G25290 879 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G100700 [exp] 213 / 2e-64 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.006G178900 [exp] 201 / 4e-60 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.002G238100 [exp] 203 / 6e-59 AT5G13970 204 / 2e-61 unknown protein Potri.014G143800 [exp] 192 / 1e-54 AT5G13970 217 / 3e-66 unknown protein Potri.003G163100 [exp] 129 / 5e-32 AT5G13310 129 / 1e-33 unknown protein Potri.011G021000 [exp] 83 / 2e-16 AT1G62390 885 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.004G002900 [exp] 81 / 1e-15 AT1G62390 926 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.011G111500 [exp] 76 / 3e-14 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.005G166300 [exp] 74 / 1e-13 AT5G65160 436 / 5e-145 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.002G094800 [exp] 74 / 1e-13 AT5G65160 451 / 2e-152 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF07719 [flax] [poplar] TPR_2 Tetratricopeptide repeat CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10031983 pacid=23161075 polypeptide=Lus10031983 locus=Lus10031983.g ID=Lus10031983.BGIv1.0 annot-version=v1.0 ATGGCTTTGATTGAAGAAGTTCCACTTGAAGACAAGAAACAGGAAACTCCCCAGAAGTTTCCTCCCGAGAAGCCTAAATCACCGTCGTCAGAGGCCGCTA CAAACGTAGGGCACACCACTGCTATATCATCCACGGGATCTGGAAGTGCTGATGTGAGAGGGAATGACTCGGATGGTTTCGAAACTGCAAGTGAACGTGA TGTGAGCGACAATGATGATGATAATCCAGAGGGGCAAAAACACTGCGACAATGTTGCAAATGAGGAAGAAGCAAACCAGGGTCTATACTTTCTTGAAGAA TACAACTTTGTTAACTCTTATCTGACACTCGTAAACTTCCATTTCTTAATGAAGGAGAAAGCATTAGCACTGGCCAATGATGCTAAATTGGAAGGCAATA GACTTTTTGGGGATATGAAGTTTGAGGAGGCACTAGTGCAGTATGACATTGCCTTACAAACTACACCTGACTTGCCCTCTTCTTCGGATCTCAGATCCAT ATGCCACTCGAACCGTGCTGTATGCTTCTTGAAACTGGGAAAATATGAGGAAACGGTTAAAGAATGCACAAAAGCACTAGAAATAAATCCTTCATATGTG AAAGCTCTAAGGAGAAGAGGAGAGGCCAATGAAAAGCTTGAGCACTTTGAGGAAGCAATTGCTGATATGAAAAAGATTTTGGAGTTAGATCCTTCTAATG ACTTCGCTCGTCCATCTATTGCTCGGTTAGAGCCATTGGCAGCAGAGAAGCGAGAAAAACTGAAGGAAGAGATGATTGCATCTCCGACTATCTGTCTGGA AGCTGAAGGAGATGGGGAACTCGTTGTTAGGGCGCTTTGGGATGAGTGTGGACAATTTCAAAGCAGTGAAAGATCCAAATACTGGATCTTACTCGCTTTC CTTTCAGAATTAGAGTTGGTTCTTGGAGGCGTCCCACTAGAGCCTCTGGTTTTCAGCCTCGGAAGAGACGAGGAAGATCAATACGATAAAGTAGCCGTTG GCAGGGTAAAATCCGGCGATCGAGTGTATATGAAGGATTTAACGAAGAATCAGTACGACATTGACACAGGCTCTTCCAGTTCACTGAAAAAAGGCTTTCT GAAGAAGGATCCACGGGCAAATCATATGGCAGCCAAACTCAGGCTCAAGGAGGATGACGAAGCTGCAGCTAACAAGATTGACTCTTTGAAGGTTTCTGGC AATGGTGGATCCCAACAGGATAGCAGCCTCAAATCCATTCTGAAGAGGAAGGGTGATCAATTGGAAGCTCAGAAGAAGAAGCAGCTAGACGATTCGAAGT CTAGCAAGCGTGTTCGATTTGATCCAGAATGCATTGATGGTTCCGAGGATCCATCAGATGATATAGAGATGGAAGGGGGTGATGATTCCCTCGTCTACCC TATGCCTGAGAGTTACCCGTCTGGAATCCCAGACTATATGCGGAATCCTACCAAGTATACTAAATACACCTTCCCTGCAACCGATGTAGACGAGGGTTCC AACCGGCAAGCCTATATGGACTTTCTGAAGCTAACAAAAAAATCGGAACCAGAAGAAAACGACCTCGGTGGTGAACTTCCAAAGTCGCTCCAGTTTGTGC CGAGAAAGAAGGACAATTGCAACGAGGATTCGAAGAACAAGCAGGAGAATGTTAGTCACAGGAAGGGCGTCATAGCTGCCGCTGCTGATGCTGATTTGGA AGCTGGCGAAACTTCCAATATGGATGAGGATGTACCAGAAACAGAAGCTGGTACTCAAAATGGTTCATCTGCGAAACCAGGCCGCCAGTATCGAATGAAA GCTAAAGCTTGA
AA sequence Show only first row Show all	>Lus10031983 pacid=23161075 polypeptide=Lus10031983 locus=Lus10031983.g ID=Lus10031983.BGIv1.0 annot-version=v1.0 MALIEEVPLEDKKQETPQKFPPEKPKSPSSEAATNVGHTTAISSTGSGSADVRGNDSDGFETASERDVSDNDDDNPEGQKHCDNVANEEEANQGLYFLEE YNFVNSYLTLVNFHFLMKEKALALANDAKLEGNRLFGDMKFEEALVQYDIALQTTPDLPSSSDLRSICHSNRAVCFLKLGKYEETVKECTKALEINPSYV KALRRRGEANEKLEHFEEAIADMKKILELDPSNDFARPSIARLEPLAAEKREKLKEEMIASPTICLEAEGDGELVVRALWDECGQFQSSERSKYWILLAF LSELELVLGGVPLEPLVFSLGRDEEDQYDKVAVGRVKSGDRVYMKDLTKNQYDIDTGSSSSLKKGFLKKDPRANHMAAKLRLKEDDEAAANKIDSLKVSG NGGSQQDSSLKSILKRKGDQLEAQKKKQLDDSKSSKRVRFDPECIDGSEDPSDDIEMEGGDDSLVYPMPESYPSGIPDYMRNPTKYTKYTFPATDVDEGS NRQAYMDFLKLTKKSEPEENDLGGELPKSLQFVPRKKDNCNEDSKNKQENVSHRKGVIAAAADADLEAGETSNMDEDVPETEAGTQNGSSAKPGRQYRMK AKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Lus10031983 [exp]	0	1
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10002533 [exp]	2.4	0.9293
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10018487 [exp]	3.2	0.9236
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10014591 [exp]	3.5	0.9237
AT2G43770			Transducin/WD40 repeat-like su...		Lus10012230 [exp]	3.6	0.9337
AT3G43520			Transmembrane proteins 14C (.1...		Lus10027640 [exp]	3.9	0.9281
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10004089 [exp]	7.2	0.8987
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10040809 [exp]	7.9	0.8794
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10013537 [exp]	10.6	0.9192
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10011154 [exp]	10.7	0.9194
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10043059 [exp]	12.6	0.9157

Compare expression of checked genes

Lus10031983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.