Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13960 728 / 0 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT2G35160 324 / 1e-99 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT2G22740 322 / 5e-99 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT5G04940 300 / 9e-92 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT1G73100 291 / 1e-88 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT4G13460 265 / 5e-79 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G33290 261 / 3e-77 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT1G17770 234 / 3e-67 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT2G24740 209 / 6e-58 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT5G47150 122 / 3e-30 YDG/SRA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035115 [exp] 1249 / 0 AT5G13960 716 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10041515 [exp] 944 / 0 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10001798 [exp] 445 / 4e-148 AT5G13960 446 / 8e-150 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10002571 [exp] 431 / 2e-143 AT5G13960 444 / 1e-149 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10040150 [exp] 334 / 2e-103 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 314 / 5e-94 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10011011 [exp] 312 / 2e-93 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10008681 [exp] 302 / 2e-92 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10029470 [exp] 290 / 7e-88 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G237950 [exp] 832 / 0 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.014G143900 [exp] 828 / 0 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G162801 [exp] 581 / 0 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G083100 [exp] 345 / 1e-105 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.001G036800 [exp] 297 / 1e-90 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G188700 [exp] 290 / 4e-88 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.016G025300 [exp] 284 / 8e-86 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.006G027600 [exp] 279 / 6e-84 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.010G064300 [exp] 276 / 9e-83 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.008G173100 [exp] 270 / 2e-80 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05033 [flax] [poplar] Pre-SET Pre-SET motif PF00856 [flax] [poplar] SET SET domain CL0178 [flax] [poplar] PUA PF02182 [flax] [poplar] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Lus10031984 pacid=23161240 polypeptide=Lus10031984 locus=Lus10031984.g ID=Lus10031984.BGIv1.0 annot-version=v1.0 ATGGTAGCTCCTTCCTTGCAATGCGTCACCGACGACGTCGACGTTCCTGCTCAACCTTCCCTCGACTCTCCTCCTCTCAAATCAACTCCCCAGACACTCC CCGTGGACCACTCCCCTCCCGCACGGCGATCCAGTGCCCGTATTCAGGCCAAACAGCGTATCCAGAAGGAGATTCTCAAACGGAAACGAGTTGGGGTTCC GGATGGTGTAGCTGAACCAGATTCCACCTTGAAACCTCCTCCCGCCAAGATAACTCAGGTCTACACTCGTCGGAGGACTGCAGAGGCTCGTAATGGAGCT GCTCATGAGGCAGAGCGGCATGTGCAGGAACACAAGAAGAAGAAGCAGGAGAAGAAGGAAGAGGTGGTGGACCAGGAGATTGTTTCTAGTGACGGTGTAC TAACCACCGGAGCATCTGGTAAGAAGAGTGCTCATGCTCGAGTCACTCAGACATTGAGAACTTTCAACAAGTACTATCTACACTTTGTGCAGGAAGAGGA GAGTAGATGTGGGAGGAAGAAGAATGCCGGAAAGCAATCCCCTAAATCAAAGTCTAAAACCAAACCAAAGAAACCTGGGAAGCGGGAGAAAGTTGCTATA CCTGACGCTAAATCAAAGGCCATGCGTCCTGATCTTAAGGCAGTGACTAAAATGATGCAAACAAATGCTATATTGTATCCAAAGAGAAGAATTGGCAACC TTCCAGGCATTGAAGTCGGGCATCAATTTTATTCAAGAGCTGAGATGGTTGTTATTGGTATCCATAATCACTGGTTGTGTGGCATTGATTATATTGGTGC TTCCAACCAAAAGGAGTACCAGAACTACAAACTTCCGCTTGCGGTATCCATTGTCTTGTCAGGAATGTACGAGGATGACCTGGATAATGCTGATGAAGTT TCTTACACAGGTCAAGGTGGGCATAATTTAAATGGTGATAAGCGCCAGAGTAAGGATCAAGTTATGGAGCGTGGAAATTTGGCACTCAAGAACTGCGTGG ACCAGTCTGTGCCTGTACGAGTGATTCGAGGCCATGTGTGCAAGAGCAGCTATGTTGGCAAGGTATATACATATGATGGCTTATATAAGGTGGAAAAGTA CTGGGCCGAGAAGGGTATATCTGGATTCACCGTATTCAAGTATGGGCTAAAGCGGCTCAAAGACCAGCCAATATTGACCACTAATCAGGTGCAATTCACA AATGGACGTGTTCCCCAGGCTATCTCTGAAATACGAGGGTTGGTATGTGATGATATCACTGGGGGACTTGAGGACGTTCCAATTCCAGCCACAAATTTGG TTGACGATCCACCTGTTCCTCCATCTGGCAAGTTGAAACTTAGTTTTACTTACTTGAAGACTAATAAAATTGCCAAAGGTGTAAAGCTCCCCAAAACCAC TGCTGGATGTAACTGCAACGGGACCTGTGTGGATCCCAGAACTTGTGCTTGTGCAAAGCTTAATGGTTCTGATTTCCCATATGTCCATCGAGATGGTGGC AGGCTAATCGAAGCAAAGGATGTTGTCTATGAGTGTGGTCCATCTTGTGGTTGTGGACCAAGCTGTGTTAACCGAACCTCTCAAAGGGGACTGAGATATC GTCTTGAGGTTTTCCGTTCACCTAAGAAGGGTTGGGCTGTACGGTCATGGGATTTCATTTATTCTGGGTCATCTGTTTGTGAGTATGTTGGAGTACTCAA GAGAACAGAAGATGTTGATAGTCTCACAGGGAATGATTATATTTTTGAGATTGACTGCTTGCAGACCATGAGAGGGTTGGGCGGGAGAGAGAGACGATCA CGGGATGCATCACTTCCAGACAGCAAAAGCATTGCGTCCGAAGAGTCAAAGTCTGACAGCATCCCAGAATTCTGCATCGATGCAGGTGCCAGTGGAAACG TTGCTAGGTTTATTAACCACAGTTGCTCTCCTAATCTGTTCGTCCAGTGCGTTCTGAGCTCACACCAAGACCTCCGACTTGCCCGTGTCGTCTTATTTGC TGCTGACAACATACCTCCTCTGCAGGAACTAACATATGACTACGGATACGCCCTCGATAGTGTAACGGGTCCTGACGGCAAGATTAAACGTGTCCCTTGC TACTGCGGTGGATCCGATTGCAGAAAGAGACTGTACTAG
AA sequence Show only first row Show all	>Lus10031984 pacid=23161240 polypeptide=Lus10031984 locus=Lus10031984.g ID=Lus10031984.BGIv1.0 annot-version=v1.0 MVAPSLQCVTDDVDVPAQPSLDSPPLKSTPQTLPVDHSPPARRSSARIQAKQRIQKEILKRKRVGVPDGVAEPDSTLKPPPAKITQVYTRRRTAEARNGA AHEAERHVQEHKKKKQEKKEEVVDQEIVSSDGVLTTGASGKKSAHARVTQTLRTFNKYYLHFVQEEESRCGRKKNAGKQSPKSKSKTKPKKPGKREKVAI PDAKSKAMRPDLKAVTKMMQTNAILYPKRRIGNLPGIEVGHQFYSRAEMVVIGIHNHWLCGIDYIGASNQKEYQNYKLPLAVSIVLSGMYEDDLDNADEV SYTGQGGHNLNGDKRQSKDQVMERGNLALKNCVDQSVPVRVIRGHVCKSSYVGKVYTYDGLYKVEKYWAEKGISGFTVFKYGLKRLKDQPILTTNQVQFT NGRVPQAISEIRGLVCDDITGGLEDVPIPATNLVDDPPVPPSGKLKLSFTYLKTNKIAKGVKLPKTTAGCNCNGTCVDPRTCACAKLNGSDFPYVHRDGG RLIEAKDVVYECGPSCGCGPSCVNRTSQRGLRYRLEVFRSPKKGWAVRSWDFIYSGSSVCEYVGVLKRTEDVDSLTGNDYIFEIDCLQTMRGLGGRERRS RDASLPDSKSIASEESKSDSIPEFCIDAGASGNVARFINHSCSPNLFVQCVLSSHQDLRLARVVLFAADNIPPLQELTYDYGYALDSVTGPDGKIKRVPC YCGGSDCRKRLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10031984 [exp]	0	1
AT1G30010			Intron maturase, type II famil...		Lus10042828 [exp]	1.4	0.9132
AT4G15840			BTB/POZ domain-containing prot...		Lus10037522 [exp]	5.7	0.9054
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10029217 [exp]	9.2	0.8917
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10042768 [exp]	9.5	0.8849
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10035855 [exp]	12.0	0.8714
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Lus10037558 [exp]	12.4	0.8746
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10009273 [exp]	12.7	0.8558
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10014367 [exp]	15.3	0.8963
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10010313 [exp]	15.9	0.9008
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10023864 [exp]	18.3	0.9003

Compare expression of checked genes

Lus10031984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.