Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63890 751 / 0 HISN8, ATHDH HISTIDINE BIOSYNTHESIS 8, histidinol dehydrogenase (.1.2) AT2G47430 601 / 0 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT2G17820 166 / 6e-41 AHK1, ATHK1 histidine kinase 1 (.1) AT1G27320 127 / 3e-29 AHK3 histidine kinase 3 (.1) AT5G35750 126 / 7e-29 AHK2 histidine kinase 2 (.1) AT2G01830 115 / 1e-25 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT5G10720 89 / 2e-17 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT2G40940 84 / 5e-16 ERS1 ethylene response sensor 1 (.1) AT1G66340 82 / 2e-15 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT5G26594 58 / 1e-09 ARR24 response regulator 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035113 [exp] 1284 / 0 AT2G47430 400 / 1e-125 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10033746 [exp] 1201 / 0 AT2G47430 615 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10031600 [exp] 1195 / 0 AT2G47430 624 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10035112 [exp] 910 / 0 AT5G63890 775 / 0.0 HISTIDINE BIOSYNTHESIS 8, histidinol dehydrogenase (.1.2) Lus10035114 [exp] 532 / 3e-177 AT2G47430 132 / 2e-34 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10029849 [exp] 434 / 3e-129 AT2G47430 489 / 2e-153 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10041891 [exp] 139 / 7e-33 AT2G17820 1561 / 0.0 histidine kinase 1 (.1) Lus10015773 [exp] 137 / 2e-32 AT1G27320 1395 / 0.0 histidine kinase 3 (.1) Lus10037032 [exp] 137 / 2e-32 AT1G27320 1094 / 0.0 histidine kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163400 [exp] 796 / 0 AT5G63890 790 / 0.0 HISTIDINE BIOSYNTHESIS 8, histidinol dehydrogenase (.1.2) Potri.001G465300 [exp] 789 / 0 AT5G63890 790 / 0.0 HISTIDINE BIOSYNTHESIS 8, histidinol dehydrogenase (.1.2) Potri.014G121500 [exp] 766 / 0 AT2G47430 753 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.008G191100 [exp] 735 / 0 AT2G47430 746 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.013G009700 [exp] 597 / 0 AT2G47430 572 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.007G056400 [exp] 144 / 2e-34 AT2G17820 1475 / 0.0 histidine kinase 1 (.1) Potri.005G111700 [exp] 142 / 1e-33 AT2G17820 1435 / 0.0 histidine kinase 1 (.1) Potri.003G171000 [exp] 137 / 3e-32 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.001G057400 [exp] 134 / 2e-31 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.014G164700 [exp] 124 / 3e-28 AT5G35750 1359 / 0.0 histidine kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0099 [flax] [poplar] ALDH-like PF00815 [flax] [poplar] Histidinol_dh Histidinol dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10031985 pacid=23161315 polypeptide=Lus10031985 locus=Lus10031985.g ID=Lus10031985.BGIv1.0 annot-version=v1.0 ATGGACTCCCGGTTTCTGTGCTTTAAGAGGAGCAGCCTGCTGAATAAACCTGTCCTCCCGCCACAATCTCGTTCCTTCGCCGCAGGTGCCATTGTCAACT GCCGGCCATTGACAGGGTTCGGTTTTAGCAGAGTGAAGTGTGCAATGAAGTCTTATCGCTTATCTGATCTAAGCCGCGTTGAGGTCGATGGCCTGAAGGC TCGTCCTCGAATTGATTTCACGTCAATTTTCAGTGTGGTGAACCCAATTGTTGATGACGTGCGCACAGGGGGAGACGCTGCAGTTAAAAAGTACACTGCA AAGTTTGATAAAGTTAACTTGGACAGCGTAGTTATGAATGTTTCCGAGCTTCCTACTCCGGAGCTTGATGCAAATGTTAGGGAAGCGTTTGACGTGGCAT ATGACAACATATATGCATTTCATGTTGCTCAAAAGTCCGGTGAAACAAATGTTGAGAACATGAAAGGTGTTAGGTGCAAAAGGGTGGCAAGAAGCATTGG TTCTGTTGGCCTGTATGTTCCAGGAGGTACTGCAGTACTACCTTCAACAGCTTTGATGCTTTCAGTTCCTGCCCAAATTGCTGGGTGCAAAACTGTTGTT CTTGCAACTCCACCAAGTCAGGATGGCAGCATATGCAAGGAGGTATTGTACTGTGCCAAGAAGGCTGGTGTGACCCATATTCTTAAAGCTGGAGGGGCAC AGGCTATCTCCGCCATGGCGTGGGGAACAGAGTCCTGCCCCAAGGTTGAGAAAATATTTGGACCAGGAAATCAGTATGTTACTGCTGCAAAAATGATTCT CCAGAACAGTGAAGCTATGATCTCTATTGACATGCCTGCTGGACCTTCTGAGGTTCTGGTCATTGCCGACAAACACGCAAATCCCGTACACATAGCTGCA GATTTATTATCTCAGGCTGAACATGGTCCTGATAGCCAGGTCGTTCTTGTAATTGCTGGGGATGGAGTTGACATGGAAGCTATGGAACACGAAATTAGTA AACAGTGTGGGAGTCTTCCTAGAGGAGAGTATGCTATGAAAGCTCTGAGCCACAGTTTTACTGTTCATGCTCATGATATGATTGAGGCCATCTCCTTTTC AAATTTGTACGCACCCGAGCATTTGATAATCAATGTGGAAAATGCTGAGAAATGGGAGGCTCTCATTGAGAATGCCGGCTCTGTGTTCTTGGGTCAGTGG ACACCGGAAAGTGTGGGAGATTATGCTAGCGGGACAAACCATGTCCTGCCGACCTATGGTTATGCACGGATGTATGGCGGGGTATCCTTGGACTCATTCC TGAAATACATGACGGTGCAGTCGCTAACCGAAGAGGGCCTGAGAAAGCTCGGTCCATATGTTGCAACCATGGCTGAGGTGGAAGGACTTGATGCCCACAA GAGAGCAAACAGTAATCCTGCCAGCTTTAAATATCTTCAAGTTTCAAGCTTCTTCCATGAGATCAGGATAATCTTCAAGGCTTTGAAACTCCTCAGGACA GTAATCCTGCCAACTCTCCAGGGCTTTAAATATCTTCCAAGAGTCTTCCATCAGGGGATCGGGATACTGGTCGTTTCAAACTTAGCAATCGGGTTTTGGT ATCAGAAAACCAACGATATGAAGGACATGATGGAGACCAGTACCAACAGTTTGCATTCTTGTTTGACATCTCAGGTTGAACAAACAGCTATTGTGGCTAA TCAGTTCAACTTGTCTGCAATGCATTTGGCCCGTCTGATGCATAATTCACTTAATCCAACTGATTTAAACTCACAGGTTGAAATGCAGGTCAAGGTGGCT CCTCTGTTGTATCAGGAATTCATAACGATCCCTTACATTTCGCAAATAGGATACATTGGACTAGAAGACTCTTTCTTCTCGTACTACTATGAGGGTAACC AAATCTATGCAATGTACTATAGAGAAATGGCATTTTATAAGCAACCACTTGATTCAGACACAGGACAGCTGAATGGAAATGCAACGAAATCCAGCGTCCC AATGAGGTCAATTAGGCATTGGGTTCGAGAAACTTTGAGTAGCAACAAAAAACAACACTCCTTTGTGAGCAAACGATGGAAAGTTAATGCTCAAGAATTC ATGTTCATCACTTTAGCTGGTGTGCATGAGCAAGGAGCAGTATTGCTGGGAATTTCAGCTGAAACAGTCAGACGTTTCTTCACTAGCATTGACCTTCAAG GAGGGAGATTGCACATAGCTACCAGAGATAGTAATCAAGTGGTTTTAGATGGTATTCCAGATAGTAAGATCTCGGAAATTGATAGAGCTTCAGTTTCCAT TGTTACTGCTGCTGGTGGGAATGTTACATGCTTTTTCGGCAATGGTGCTGCTGTTGTCAATATTGAACAACAAGAATACAAAGTATATTGTTCCTCAATT GAACTTGTTGGAGTGGAAATGTTCTATGCATTGGCATTTCCAAATGATGAGACGGAGGGAAGCGGTACTGTTCATAGGAGCAGAAGGTTAGCTTTCATTC TGCTAATGGTAATGATCGGTGTGCTTGTGATCTCCATATTTGGATTCTTGCTGCTCACTGCAAAGGCTGCAAAAAGGGTGATACAGCTGCGTGGAGCGTT GATAAAACAAATGGAAGCCACTCAACAAGCTGAAAGGAAGTCTTTGAAGAAGAGTCTCGGCTTTGCCAGTGCCAGCCACGAGATTCGTAACTTGTTGACA CCCATTTCTGGCTTCATAGAGGATTGCGTTATGGACTGCTCCTCAGATTCTGCTAGAGCAACAAACCTGAAAGCCATTCATGATTCCACTAAGGACTTGA TCAGTTTCTTGAGTGCTATGCTAGACACAAGCAAACTCGAAGAAGGAAAGATGCAGTTGGAAGAAAAAGAATTCAGTGTAGCTAGTGTTCTTGAGGACGT GGTTGATTTGTGTCATCCAATGGCCATGAAGAAAGACGTCGACTTGATTTTAGATTTATCACATGTCTCCATTCTCAAGTTTAGTCACGTGATAGGTGAT AGGGGAAAGCTGAAACAGGTATTGTGGAACTTAGTGAGCAATGCTGTGAAGTACACAGATGAAGGGCAAATCGTTGTTCGAGCCCGGGCTCAACAACCAG ATTTGGAGAACGTGATTATAGAATCCTACCATGATGGTTGCTCTAGATGGGTGTCGAAATTGGTCAAGTGGAACAACAATGGAGAAGACGACCAAGTTGA GGAAATTCTAAGTGCTATGGAGCACAATCCGAATCGTATAGAGTTTGTCTTTGAGGTGGATGATTCAGGTAAAGGAATTCCTAAAGATAAGCAGAAGTCT ATCTTTGAAAATTATGTTCAAGTGAAGGAAAATTCTGAAGGGCAAGTTGGCACTGGCTTGGGACTTGGCATTGTTCAATCTTTGGTACGCCTAATGGGAG GAGAAATAGAGATAGTTGATAAGGAAAATGATGAGAAAGGAACTTGCTTCAGGTTCAACTGCCTCCTCACCGTGTCTGATACTAATCATAACAACATAAG AAATGACTTAGATCAGTTGGGAAATGAGATCACTGAAGATTGTAATAATAGAAGCTTCAGCTATCCTGGACTGTGTGTTCCTAGTCCAAGGAGGGTTGGA TCCCATGTCGTGCTCTTGATCAAGAACGAAGCACGAAGGAGAGCTTCACAGAAGTTTATGGAGAATTTGGATATAAAGGTGACAGTAGTGGAGCACTGGG AACACCTCCAATATGTGCTCTCGAAAATGAAGTCAAATCTGAATCCTCTTTCTCCTTTGAGTTCTTTAAGAAAATCTGACACAGGTTCAAGGAGTTGGAA TTCAAGTGCTGGATCAAAGGATATCCCATTGAGTGCAATGGAAGGCAAGGACGAGCAAAAAAATTCCTTGAGGAACAAGGCTCTCCGAACTGGATCAGGA TTTTTGCTACTGGTGGTTGATGCCTGTGCTGGACCGTTCGAGGAACTGCGTAAAATTGTGACGGACTTCAAAACATGCCTTCACTTCTCTAGCCTCAAGG TTGTGTGGATCGATAAACCGATATCGAGAAGAGTTGAGGGTGACCTCATTGATCCCAGCGATGAAATAATGCTGAAACCATTCCATGGTGCTGGTTTAAT TGATGTAATCAAACTCCTCCCAGAATATGAAGTAACAACACCAGCCAGGAAGAAAATCAAAGAATTATGTGCTTCTTCTTCTTCTTCTTCGTGTGTTAGG CATCAGATCGTCAGAGCTAAATCAAGTCCCCCATTTATGGGAGACTTGGAGATCAAGAAAGAAGAAGAACAAGAACATGATGTGGTGAAATCAAGCATTG AAAACATGCCTTTGAATGGAGTAACATTCTTGGTTGTGGATGATAGTAAACCTGTCAGGGTTGTATCCACATTCATCCTTTCGAAGCTAGGAGCCAAGTC AGAACAGTGTGGAGACGGAGTGCAAGCTCTCGATCGTTTTCGAGTGTCCCTCGAAGAGCAAGTTAGGAATGGAGTTTCTCCTCCGGTCCCTCCTTATGAC TTCATCCTCATGGACTGCCAGATGCCGAAGATGGATGGGTATGAATCGACGATAGCGATAAGGGAAGAGGAGAAACGATATGGCATTCACACTCCGATAA TAGGACTAACAGGAAATACATCAAAGGAAGAACTGGACAGGGCAGTTCAAGCTGGAATGGATGTTCACCTCACCAAGCCCTTTCAGAGAGACGACATTTT GGAAGCCGTTAGAAGGATTCGTGACGGAGCAGCGTTAGCTCCATGA
AA sequence Show only first row Show all	>Lus10031985 pacid=23161315 polypeptide=Lus10031985 locus=Lus10031985.g ID=Lus10031985.BGIv1.0 annot-version=v1.0 MDSRFLCFKRSSLLNKPVLPPQSRSFAAGAIVNCRPLTGFGFSRVKCAMKSYRLSDLSRVEVDGLKARPRIDFTSIFSVVNPIVDDVRTGGDAAVKKYTA KFDKVNLDSVVMNVSELPTPELDANVREAFDVAYDNIYAFHVAQKSGETNVENMKGVRCKRVARSIGSVGLYVPGGTAVLPSTALMLSVPAQIAGCKTVV LATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQAISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADKHANPVHIAA DLLSQAEHGPDSQVVLVIAGDGVDMEAMEHEISKQCGSLPRGEYAMKALSHSFTVHAHDMIEAISFSNLYAPEHLIINVENAEKWEALIENAGSVFLGQW TPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLRKLGPYVATMAEVEGLDAHKRANSNPASFKYLQVSSFFHEIRIIFKALKLLRT VILPTLQGFKYLPRVFHQGIGILVVSNLAIGFWYQKTNDMKDMMETSTNSLHSCLTSQVEQTAIVANQFNLSAMHLARLMHNSLNPTDLNSQVEMQVKVA PLLYQEFITIPYISQIGYIGLEDSFFSYYYEGNQIYAMYYREMAFYKQPLDSDTGQLNGNATKSSVPMRSIRHWVRETLSSNKKQHSFVSKRWKVNAQEF MFITLAGVHEQGAVLLGISAETVRRFFTSIDLQGGRLHIATRDSNQVVLDGIPDSKISEIDRASVSIVTAAGGNVTCFFGNGAAVVNIEQQEYKVYCSSI ELVGVEMFYALAFPNDETEGSGTVHRSRRLAFILLMVMIGVLVISIFGFLLLTAKAAKRVIQLRGALIKQMEATQQAERKSLKKSLGFASASHEIRNLLT PISGFIEDCVMDCSSDSARATNLKAIHDSTKDLISFLSAMLDTSKLEEGKMQLEEKEFSVASVLEDVVDLCHPMAMKKDVDLILDLSHVSILKFSHVIGD RGKLKQVLWNLVSNAVKYTDEGQIVVRARAQQPDLENVIIESYHDGCSRWVSKLVKWNNNGEDDQVEEILSAMEHNPNRIEFVFEVDDSGKGIPKDKQKS IFENYVQVKENSEGQVGTGLGLGIVQSLVRLMGGEIEIVDKENDEKGTCFRFNCLLTVSDTNHNNIRNDLDQLGNEITEDCNNRSFSYPGLCVPSPRRVG SHVVLLIKNEARRRASQKFMENLDIKVTVVEHWEHLQYVLSKMKSNLNPLSPLSSLRKSDTGSRSWNSSAGSKDIPLSAMEGKDEQKNSLRNKALRTGSG FLLLVVDACAGPFEELRKIVTDFKTCLHFSSLKVVWIDKPISRRVEGDLIDPSDEIMLKPFHGAGLIDVIKLLPEYEVTTPARKKIKELCASSSSSSCVR HQIVRAKSSPPFMGDLEIKKEEEQEHDVVKSSIENMPLNGVTFLVVDDSKPVRVVSTFILSKLGAKSEQCGDGVQALDRFRVSLEEQVRNGVSPPVPPYD FILMDCQMPKMDGYESTIAIREEEKRYGIHTPIIGLTGNTSKEELDRAVQAGMDVHLTKPFQRDDILEAVRRIRDGAALAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63890		HISN8, ATHDH	HISTIDINE BIOSYNTHESIS 8, hist...		Lus10031985 [exp]	0	1
AT3G23620			Ribosomal RNA processing Brix ...		Lus10027714 [exp]	3.6	0.8490
AT4G18100			Ribosomal protein L32e (.1)		Lus10004589 [exp]	4.9	0.8474
AT5G06360			Ribosomal protein S8e family p...		Lus10021274 [exp]	6.9	0.8338
AT2G19740			Ribosomal protein L31e family ...		Lus10018032 [exp]	9.2	0.8273
AT2G40660			Nucleic acid-binding, OB-fold-...		Lus10034239 [exp]	9.5	0.8023
AT1G41880			Ribosomal protein L35Ae family...		Lus10040235 [exp]	12.6	0.8184
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10021315 [exp]	15.7	0.8159
AT4G18100			Ribosomal protein L32e (.1)		Lus10031699 [exp]	19.1	0.7887
AT5G37530			NAD(P)-binding Rossmann-fold s...		Lus10012735 [exp]	19.7	0.7484
AT3G54200			Late embryogenesis abundant (L...		Lus10040941 [exp]	20.0	0.7769

Compare expression of checked genes

Lus10031985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.