Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13200 298 / 1e-101 GRAM domain family protein (.1) AT2G22475 180 / 4e-55 GEM GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) AT1G28200 177 / 2e-54 FIP1 FH interacting protein 1 (.1) AT5G23370 139 / 3e-40 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23360 135 / 9e-39 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G08350 135 / 1e-38 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23350 133 / 2e-37 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT4G01600 131 / 4e-37 GRAM domain family protein (.1.2) AT4G40100 129 / 4e-36 GRAM domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035154 [exp] 471 / 8e-170 AT5G13200 308 / 9e-106 GRAM domain family protein (.1) Lus10040539 [exp] 194 / 9e-61 AT1G28200 338 / 6e-118 FH interacting protein 1 (.1) Lus10000640 [exp] 191 / 9e-60 AT1G28200 333 / 5e-116 FH interacting protein 1 (.1) Lus10025728 [exp] 167 / 1e-49 AT2G22475 304 / 4e-103 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10013445 [exp] 159 / 1e-47 AT5G08350 246 / 1e-82 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10017372 [exp] 158 / 3e-47 AT5G08350 238 / 2e-79 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10010279 [exp] 157 / 9e-47 AT2G22475 196 / 3e-62 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10010166 [exp] 152 / 4e-45 AT5G08350 233 / 1e-77 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10035933 [exp] 154 / 4e-44 AT2G22475 265 / 1e-86 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G323300 [exp] 311 / 1e-106 AT5G13200 290 / 2e-98 GRAM domain family protein (.1) Potri.003G165400 [exp] 281 / 9e-95 AT5G13200 350 / 6e-122 GRAM domain family protein (.1) Potri.003G165500 [exp] 278 / 1e-93 AT5G13200 328 / 3e-113 GRAM domain family protein (.1) Potri.003G165600 [exp] 278 / 2e-93 AT5G13200 323 / 1e-111 GRAM domain family protein (.1) Potri.003G165700 [exp] 276 / 8e-93 AT5G13200 326 / 1e-112 GRAM domain family protein (.1) Potri.014G109700 [exp] 180 / 3e-56 AT1G28200 221 / 1e-72 FH interacting protein 1 (.1) Potri.005G159100 [exp] 176 / 1e-53 AT1G28200 295 / 2e-100 FH interacting protein 1 (.1) Potri.002G184100 [exp] 168 / 9e-52 AT1G28200 219 / 7e-72 FH interacting protein 1 (.1) Potri.002G102800 [exp] 170 / 2e-51 AT1G28200 325 / 3e-112 FH interacting protein 1 (.1) Potri.005G088400 [exp] 162 / 5e-49 AT5G23370 241 / 8e-81 GRAM domain-containing protein / ABA-responsive protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF02893 [flax] [poplar] GRAM GRAM domain
Representative CDS sequence Show only first row Show all	>Lus10031986 pacid=23161266 polypeptide=Lus10031986 locus=Lus10031986.g ID=Lus10031986.BGIv1.0 annot-version=v1.0 ATGAACCCATTCCTTTCTACTCCGGCCAATCATCCACCACCACCACCATCATCATCATCATCATCTCCTTCGCCACCGCCGCCGCCGACCACAGAACAAT GGGGCACATACGTCATGGGACCACCGGCGGCGCCTTCCTCCCATCCCGACAACCAGAAAGCAGCTGCCTTTTGGGGCGCTAATAGTAACCATACTCCCTC ATCTTCCTCCACAACCACCACATCTCCTCCCGCCGTCGCCGGTCAGAACCAACATCCTTACTTGGTCCACTCTCCCGCCGAAAAACCCGCCGCCAACCCC ATGGATTCCATCCTCCATGTCTTCAATTCCTGGTCCAACAAGGCCGAATCCCTAGCCAACAACATCTGGCACAACCTGAAGACGAATTCCTCAGTCTCGG AAGCAGCGTGGGGGAAGATGAATCTGACGGCGAAGGTGATAACAGAAGGCGGATTCGAGTCTCTGTACAAGCAGACTTTTGCCACCTACCCTGACGAGAA GCTGAAGAAGAGATTCGCCTGCTATCTCTCGACAATGACGGGGCCGGTGGCCGGGACTCTGTATCTGTCGAACGTCCAGGCGACGTTTTGCAGCGATCGG CCGCTGTCGTTCACGGCGCCGTCGGGGCAGCAGACGTGGAGCTACTACAAGGTAGCGGTGCCGCTGGAGAAGATCCGGAGCGTGAATCCGGTGGTGATGA GGGAGAAGCCGGCGTCGGAGAAGTATGTTCAGGTGGTGACGGTGGAAGGTCATGATTTCTGGTTCATGGGGTTTGTTAATTACGAGAAGGCGTGTCGCCA TTTGACTCAGGGCACCTCCGGTTCTCCGGTAGCCGGTTTATTTTGA
AA sequence Show only first row Show all	>Lus10031986 pacid=23161266 polypeptide=Lus10031986 locus=Lus10031986.g ID=Lus10031986.BGIv1.0 annot-version=v1.0 MNPFLSTPANHPPPPPSSSSSSPSPPPPPTTEQWGTYVMGPPAAPSSHPDNQKAAAFWGANSNHTPSSSSTTTTSPPAVAGQNQHPYLVHSPAEKPAANP MDSILHVFNSWSNKAESLANNIWHNLKTNSSVSEAAWGKMNLTAKVITEGGFESLYKQTFATYPDEKLKKRFACYLSTMTGPVAGTLYLSNVQATFCSDR PLSFTAPSGQQTWSYYKVAVPLEKIRSVNPVVMREKPASEKYVQVVTVEGHDFWFMGFVNYEKACRHLTQGTSGSPVAGLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13200			GRAM domain family protein (.1...		Lus10031986 [exp]	0	1
AT1G76600			unknown protein		Lus10037249 [exp]	2.4	0.9051
AT1G18210			Calcium-binding EF-hand family...		Lus10009059 [exp]	4.2	0.8827
AT3G49930	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10018696 [exp]	4.7	0.9019
					Lus10041357 [exp]	5.7	0.8652
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10043369 [exp]	5.9	0.8913
AT5G13200			GRAM domain family protein (.1...		Lus10035154 [exp]	6.9	0.8416
AT2G26530		AR781	Protein of unknown function (D...		Lus10032881 [exp]	8.5	0.8926
AT5G35735			Auxin-responsive family protei...		Lus10012350 [exp]	8.5	0.8712
AT5G53250		AGP22, ATAGP22	arabinogalactan protein 22 (.1...		Lus10037436 [exp]	9.2	0.8785
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Lus10007493 [exp]	10.4	0.8921

Compare expression of checked genes

Lus10031986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.