Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26780 442 / 2e-154 MEF14 mitochondrial editing factor 14, Phosphoglycerate mutase family protein (.1) AT1G12850 428 / 1e-148 Phosphoglycerate mutase family protein (.1) AT5G04120 51 / 5e-07 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035155 [exp] 709 / 0 AT3G26780 491 / 2e-173 mitochondrial editing factor 14, Phosphoglycerate mutase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G145900 [exp] 478 / 6e-168 AT3G26780 452 / 3e-158 mitochondrial editing factor 14, Phosphoglycerate mutase family protein (.1) Potri.002G236600 [exp] 474 / 2e-166 AT1G12850 463 / 1e-162 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10031987 pacid=23161318 polypeptide=Lus10031987 locus=Lus10031987.g ID=Lus10031987.BGIv1.0 annot-version=v1.0 ATGGGCGCTTCTCAATCAGCCCACGAGGCCGAAGAGCTAGCAAGTGAAGACGAAGAGGAAGAAGACGACGACAGAGAAGAAGAGGGTCTCACCGGAGACA GCAGGGTCAATGCCGCCGGCAACGAGAACTCGTTGGTTAAAAAGCTTCTGGAACAAGAGCCCGAGATGCTGCCCTGTTACGCATCAGCTTCTCCGCTCTC TCCTCAGCTCTCGTCTCTCGGCACTCCTCGCCTTGGCCCTTCTATCAAAGTCTGGGATCCTTACAACGTCCTCGGCCCTCCGCCGCCGCCTCCTCCAATC CCTGTTTTCTCCCGGAGCTACTCCATGGCCAGTGCCGGTGGCGGGAACGGCGACGATGACCACCGGGCGGTGACGGAGGTGGTTTTGGTTAGTCATGGTG AGTGTGAGCTGAACTTAAGGCCTGATTTGGTTGGTGGAAGGTGTCATATGGCTGGATTGAGTCCTATTGGGAAGCGCCAAGCTAGGGCATTGGCTGTTTT TCTTAACTCGCAAGGGGTTAGGTTCAATGCCGTTTATTCTTCGCCTCTTGACCGGGCAAGATCAATGGCTGCTTTGGTCTGTCAGGAAATGAATTTTGCC AAGGAACAAATACAAACCTCAGATGAACTTTCCGAGATGAGCATGGGGCTCTGGGAGGGGTGTTCCCACTCAGAGATATATACGCCAGAAGTTGTTAGTT TGGTTGAAAGTTCTCAGCCTGATTTCTGTGCACCATCTGGGGAGTCACTCAGACAAGTGGAATTCAGGATGGTTCAGTTCTTGAACGGGACTATTGCTAG GTTACCTGAAAAGTTGAGGGCTGATTTCTCAATGCATCATCAGAATGATAACCAGGGAGGAGGGTTTGCTCATGACAGAGATGGCCAATCCTCCCTACCC TCTCCCCATTGGGATGCGGTGCATCAACACCACCACAGGCCGGGTCTCACGAGGAAAAAGTCTGGGAAGAGTAGGCTGCAATATGTCACTTCCACCGGGA ATCAAGAGGTCGGAGAGGATGAGACCTCTCCTAGCGAAACCAACCAGCGGATCAGCTCAATTACTGATGGTTTAAGCGTCCGGGGCTCTTCCCCATCATC ATCTGTCTCTTCGTGTGTCGGTGTTTTCACTCATTCAGTCCCCATCAAGTGCCTCCTCACAGGTCTACTAGGCTGCAACCCTGTAATGTCCCATAAGATC TGCATCGACGATTCCTCGGTAACAGTGTTGCAGCATTCTCTTCGAACAGGCTGGCAGATAAAGCGACTGAACGATACAGCACATCTACGGCTTCTTTAA
AA sequence Show only first row Show all	>Lus10031987 pacid=23161318 polypeptide=Lus10031987 locus=Lus10031987.g ID=Lus10031987.BGIv1.0 annot-version=v1.0 MGASQSAHEAEELASEDEEEEDDDREEEGLTGDSRVNAAGNENSLVKKLLEQEPEMLPCYASASPLSPQLSSLGTPRLGPSIKVWDPYNVLGPPPPPPPI PVFSRSYSMASAGGGNGDDDHRAVTEVVLVSHGECELNLRPDLVGGRCHMAGLSPIGKRQARALAVFLNSQGVRFNAVYSSPLDRARSMAALVCQEMNFA KEQIQTSDELSEMSMGLWEGCSHSEIYTPEVVSLVESSQPDFCAPSGESLRQVEFRMVQFLNGTIARLPEKLRADFSMHHQNDNQGGGFAHDRDGQSSLP SPHWDAVHQHHHRPGLTRKKSGKSRLQYVTSTGNQEVGEDETSPSETNQRISSITDGLSVRGSSPSSSVSSCVGVFTHSVPIKCLLTGLLGCNPVMSHKI CIDDSSVTVLQHSLRTGWQIKRLNDTAHLRLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26780		MEF14	mitochondrial editing factor 1...		Lus10031987 [exp]	0	1
AT3G26780		MEF14	mitochondrial editing factor 1...		Lus10035155 [exp]	3.5	0.9021
AT3G03570			Protein of unknown function (D...		Lus10005664 [exp]	4.7	0.8934
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Lus10014912 [exp]	12.2	0.8267
AT2G20360			NAD(P)-binding Rossmann-fold s...		Lus10022859 [exp]	17.9	0.8551
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Lus10035459 [exp]	18.0	0.8603
AT2G46900			unknown protein		Lus10036338 [exp]	22.0	0.8197
AT2G46900			unknown protein		Lus10010275 [exp]	24.6	0.8586
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031186 [exp]	40.5	0.8565
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10006916 [exp]	47.7	0.8426
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10012574 [exp]	48.7	0.8241

Compare expression of checked genes

Lus10031987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.