Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26782 833 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 500 / 4e-167 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 500 / 5e-166 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 486 / 6e-163 MEF22 mitochondrial editing factor 22 (.1) AT3G11460 477 / 2e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 478 / 4e-159 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 479 / 1e-158 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 474 / 4e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 472 / 4e-157 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 472 / 2e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017446 [exp] 520 / 3e-174 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014211 [exp] 492 / 2e-166 AT3G11460 791 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 496 / 2e-164 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 490 / 4e-162 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 483 / 5e-161 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 485 / 1e-160 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10019735 [exp] 481 / 1e-159 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 475 / 1e-158 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 470 / 2e-156 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G322100 [exp] 937 / 0 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G075800 [exp] 506 / 2e-168 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G220300 [exp] 497 / 5e-167 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 497 / 1e-165 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 497 / 1e-165 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 495 / 4e-165 AT3G22690 582 / 0.0 unknown protein Potri.006G211400 [exp] 488 / 6e-165 AT3G11460 772 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G152000 [exp] 492 / 1e-164 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.016G128900 [exp] 490 / 1e-164 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G111900 [exp] 489 / 6e-164 AT4G33990 518 / 1e-173 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10031989 pacid=23161123 polypeptide=Lus10031989 locus=Lus10031989.g ID=Lus10031989.BGIv1.0 annot-version=v1.0 ATGAGAAGGGTTCCGCGTTACTGTCCGCTGGTTTTCCTGCCTGCTCAGCAGCTCCGTCAACTCCATCGCTATTCCACGGCCGCCACTACCGCCTACCTCA GAACCTGGTTCGATAAGTATTTTGATAAAGCAAATGTACACTCCTGGAACTCCCTTATCGCCGAATTGGCTCGCGGCGGCGATTCCCTCGAGTCCCTTCG TGCCTTCTCTTCCATGCGGAAGCTCAATCTCACCCCTAACCGCTCCACCTTCCCTTGCGCTATCAAAGCGTGTTCTTCCTTGTCAGACATTCGCTCCGGC CAACAAGCACACCAGCAAGCTCTCATCTTCGGCTTCGAGTTCGACCTCTTCGTCGCCTCTTCGTTGATTGACATGTACTGCAAATGCGGCCACTTTGGGG ATGCAAGAAACTTGTTCGACGAAATTCCTCACAGAAACATCGTCGTCTGGACGTCATTGATAAATGGGTATGTTCAGCAGGATTATCCCTTCCAAGGATT ACTATTGTTTAAGGAGCTCCTGGCCCACCATGGAAGTAGTGATGAGGAAGAGGAGATGGCCGTAGATTCATTTGTTATGGTATCTGTTCTGATGGCTTGT TCTCGTCTTTCTGTATTGGGGATGACTGAGGGTCTACATGGTTTTGTTGTCAAGTTGGGATTCGATGATGAAGTGAGAGTTGCTAATACTATGCTTACTG CATATGCCAAGGGTGGTGCTGTGGGAATGTCTAGAAAGGTGTTCGACGAAATGAGTGAGAGAGACTCAGTATCTTGGAATTCTATTATGGCTATGTATGC TCAAAATGGCTTATCCGGGGAGGCATTTGAAGTGTTTAATGCAATGGTAAAAGGTGGCGTATCGGATTACAATGCAGTGACATTATCTACTCTGTTGTTA GCTTCTGCACATTCTGGGTCTTTGCGAGCAGGCAAGTGTATTCATGATCAGGTTATAAAGATGGGAATCCTGGATAATGTAGTCGTGGGAACCTCTGTGA TTGATATGTACTGCAAATGTGGGAAAGTTCAAATGGCTAGAAAGTCATTTGATGGTATGAAGGAGAAAAATGTAAGATCTTGGACAGCTATGATTAGCGG TTATGGTATGCATGGTTTTGCAATGGAAGCCTTGGATGTTTTCTATGAGATGATAATGGTTGGTGTAAAACCAAATTACATAACTTTTATTTCAGTTCTG AATGCTTGTAGCCATGCTGGCCTGGTGGAAGAAGGATGGCGTTGGTTCAATTCTATGAACTATCAATATCAAATAGTACCTGGCTTGGAGCATTATAGTT GCATGGTTGATCTTCTTGGCCGGGCTGGTCGTCTCTACGAGGCTTATGATCTGATAAGGACGATGAAAGTGAGGTCTGATTTTATCCTCTGGGGTTCTCT ACTTGCAGCATGCAGAATCCACAAGAATTTGGAGTTAGCAGAGATTTCAGCTAAACAATTGTTCGAGCTGAACCCAGATAATTCTGGTTATTACGTATTG CTTTCACACATATATGCAGATGCGGGAAGATGGAATGATGTTGAGCGAATGAGAGCATTCATGAAAGATAGTGGGCTGGTCAAGACGCCTGGTTTCAGTC TAACTGAACTCAAGGGCGATGTGCATGTTTTCCTGGTTGGAGATAAAGACCATCCTCAACACAAGAAGATTTATCAGTATTTGGAAAACCTTGATGTGAA GCTGCAGCATGCTGGCTATGTACCTGATATGACTTCTGTCCCTCATGATGTTGACGAGGAAGAGAAGGGAATAAATTTGCGAGGTCATAGTGAGAAATTA GCGGTTGCTTTTGGGATCATTAACTCAGTTCCTGGAGCAACAATTCATGTCATGAAGAATCTTCGGGTCTGTGGTGATTGCCACACTGTGATTAAGCTGA TATCCAAGATTGAAAACCGGGAAATTACCGTGAGAGATTCAAAGCGATTTCATCACTTCAAGGATGGTGTTTGTTCATGTGGAGATTATTGCATTGGAAA GCACCAAGAAGAAAGCTCAGCATTAAAGTCTGCTGCTGTGAAGCATACAATTGAGTTTATGCACTGTAACATACAAGATCTCAGGAAGCAAATCTGCATC ATATCATTGATCTCTCCTGAACAGCTTATCCCAAAGCTGGTGTAA
AA sequence Show only first row Show all	>Lus10031989 pacid=23161123 polypeptide=Lus10031989 locus=Lus10031989.g ID=Lus10031989.BGIv1.0 annot-version=v1.0 MRRVPRYCPLVFLPAQQLRQLHRYSTAATTAYLRTWFDKYFDKANVHSWNSLIAELARGGDSLESLRAFSSMRKLNLTPNRSTFPCAIKACSSLSDIRSG QQAHQQALIFGFEFDLFVASSLIDMYCKCGHFGDARNLFDEIPHRNIVVWTSLINGYVQQDYPFQGLLLFKELLAHHGSSDEEEEMAVDSFVMVSVLMAC SRLSVLGMTEGLHGFVVKLGFDDEVRVANTMLTAYAKGGAVGMSRKVFDEMSERDSVSWNSIMAMYAQNGLSGEAFEVFNAMVKGGVSDYNAVTLSTLLL ASAHSGSLRAGKCIHDQVIKMGILDNVVVGTSVIDMYCKCGKVQMARKSFDGMKEKNVRSWTAMISGYGMHGFAMEALDVFYEMIMVGVKPNYITFISVL NACSHAGLVEEGWRWFNSMNYQYQIVPGLEHYSCMVDLLGRAGRLYEAYDLIRTMKVRSDFILWGSLLAACRIHKNLELAEISAKQLFELNPDNSGYYVL LSHIYADAGRWNDVERMRAFMKDSGLVKTPGFSLTELKGDVHVFLVGDKDHPQHKKIYQYLENLDVKLQHAGYVPDMTSVPHDVDEEEKGINLRGHSEKL AVAFGIINSVPGATIHVMKNLRVCGDCHTVIKLISKIENREITVRDSKRFHHFKDGVCSCGDYCIGKHQEESSALKSAAVKHTIEFMHCNIQDLRKQICI ISLISPEQLIPKLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26782			Tetratricopeptide repeat (TPR)...		Lus10031989 [exp]	0	1
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10030451 [exp]	2.4	0.8973
AT3G15140			Polynucleotidyl transferase, r...		Lus10009194 [exp]	3.7	0.8992
AT3G53940			Mitochondrial substrate carrie...		Lus10021497 [exp]	9.0	0.8743
AT3G21060		RBL	RbBP5 LIKE, Transducin/WD40 re...		Lus10035969 [exp]	9.3	0.8980
AT2G46050			Pentatricopeptide repeat (PPR-...		Lus10036375 [exp]	15.2	0.8735
AT5G11350			DNAse I-like superfamily prote...		Lus10013119 [exp]	16.1	0.8716
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10017973 [exp]	16.8	0.8466
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10021677 [exp]	17.9	0.8743
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	21.0	0.8785
AT5G25590			Protein of unknown function (D...		Lus10037902 [exp]	21.9	0.8822

Compare expression of checked genes

Lus10031989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.