Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12840 615 / 0 ATVHA-C, DET3 DE-ETIOLATED 3, ARABIDOPSIS THALIANA VACUOLAR ATP SYNTHASE SUBUNIT C, vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035159 [exp] 696 / 0 AT1G12840 663 / 0.0 DE-ETIOLATED 3, ARABIDOPSIS THALIANA VACUOLAR ATP SYNTHASE SUBUNIT C, vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G061100 [exp] 617 / 0 AT1G12840 645 / 0.0 DE-ETIOLATED 3, ARABIDOPSIS THALIANA VACUOLAR ATP SYNTHASE SUBUNIT C, vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) (.1) Potri.001G322500 [exp] 612 / 0 AT1G12840 625 / 0.0 DE-ETIOLATED 3, ARABIDOPSIS THALIANA VACUOLAR ATP SYNTHASE SUBUNIT C, vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03223 [flax] [poplar] V-ATPase_C V-ATPase subunit C
Representative CDS sequence Show only first row Show all	>Lus10031990 pacid=23161110 polypeptide=Lus10031990 locus=Lus10031990.g ID=Lus10031990.BGIv1.0 annot-version=v1.0 ATGGCGTCTAGGTACTGGGTTGTCTCTCTCCCGGTGAAGGACTCGGCTTCTACCCTATGGAACCGTCTACAGGACCAAATCTCCAGGCATTCCTTCGACA CTCCTCTCTACAGATTCAACATTCCTAATCTCCGTGTCGGAACTCTGGATTCTCTCCTCTCCCTCAGTGATGACCTGCTCAAGTCGAACAGCTTCCTGGA GGCAGTCTCTCACAAGATTAGGAGGCAGATCGAGGATTTGGAGAGAATTTCTGGTGCTGAAAGCAATGCTCTAACTGTTGACGGTGTGCCGGTCGATTCC TACCTCACCAGGTTTGTTTGGGATGAAGCGAAGTATCCTACTATGTCACCTCTTAAGGAGATTGTTGATGGGATTCATAGTTCAGTGGCAAAGATTGAAG ATGATCTCAAGGTTCGTGTGGCTGAGTATAACAATGTACGCAGTCAGCTTAATGTTATCAACCGCAAACAAAGTGGAAGTTTGGCTGTTCGTGATCTCTC CAATTTGGTGAAACCGGATGACATCATTTCATCTGAACATCTTGAAACTCTCCTTGCTATTGTCCCCAAGTATTCACAGAAGGACTGGTTAGCAAGCTAC GAAACTCTGACTAATTATGTGGTCCCCAGGTCTTCCAAGAAGCTGTTTGAAGACAACGAATATGCTCTTTACACCGTGACACTCTTTCGCCGTGTTGCTG ACAATTTCAGAACAAGTTCTCGTGAAAAGGGGTTCCAAGTCCGTGATTTTGAATACAGCTCTGAAGCACAAGAGGATAGGAAGCAAGAGATGGACAGACT AGTTCAAGATCAAGAAAGTTTGAGAAGCTCTCTTTTGCAATGGTGTTATACTAGCTATGGGGAGGTATTTAGCTCCTGGATGCACTTCTGCGCTGTGCGT GTCTTTTCAGAGAGCATATTGAGATACGGACTGCCACCAAATTTCTTGTCTTGCGTGTTAGCCCCAGGCCCAAAAAGTGAGAAGAAAGTACGATCAATCC TTGAGGGGCTGTGTGACACTGCAAACAGCACATTCTGGAAATTGGAAGAGGAAGCAGGAGCAGGAATGGCAGCCCTGGGAGGGGATGGCGATGGACATGC ATATGTGTCATTCACGATCAATCTTGCCTGA
AA sequence Show only first row Show all	>Lus10031990 pacid=23161110 polypeptide=Lus10031990 locus=Lus10031990.g ID=Lus10031990.BGIv1.0 annot-version=v1.0 MASRYWVVSLPVKDSASTLWNRLQDQISRHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFLEAVSHKIRRQIEDLERISGAESNALTVDGVPVDS YLTRFVWDEAKYPTMSPLKEIVDGIHSSVAKIEDDLKVRVAEYNNVRSQLNVINRKQSGSLAVRDLSNLVKPDDIISSEHLETLLAIVPKYSQKDWLASY ETLTNYVVPRSSKKLFEDNEYALYTVTLFRRVADNFRTSSREKGFQVRDFEYSSEAQEDRKQEMDRLVQDQESLRSSLLQWCYTSYGEVFSSWMHFCAVR VFSESILRYGLPPNFLSCVLAPGPKSEKKVRSILEGLCDTANSTFWKLEEEAGAGMAALGGDGDGHAYVSFTINLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Lus10031990 [exp]	0	1
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Lus10035159 [exp]	1.0	0.9118
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Lus10029418 [exp]	2.6	0.8167
AT4G01897			unknown protein		Lus10038061 [exp]	4.9	0.8089
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Lus10004213 [exp]	4.9	0.8291
AT3G24160		PMP	putative type 1 membrane prote...		Lus10000760 [exp]	5.5	0.8244
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000694 [exp]	6.8	0.8386
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000347 [exp]	9.2	0.7824
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Lus10008615 [exp]	9.9	0.8293
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Lus10026435 [exp]	10.6	0.7647
AT1G05070			Protein of unknown function (D...		Lus10030034 [exp]	11.1	0.7623

Compare expression of checked genes

Lus10031990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.