Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26810 611 / 0 AFB2 auxin signaling F-box 2 (.1) AT1G12820 589 / 0 IPS1, AFB3 auxin signaling F-box 3 (.1) AT3G62980 475 / 3e-164 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) AT4G03190 442 / 2e-151 ATGRH1, ATGER1, AFB1, GRH1 AUXIN SIGNALING F BOX PROTEIN 1, GRR1-like protein 1 (.1) AT5G49980 402 / 4e-135 AFB5 auxin F-box protein 5 (.1) AT4G24390 395 / 2e-132 AFB4 auxin signaling F-box 4, RNI-like superfamily protein (.1.2) AT2G39940 145 / 9e-38 COI1 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) AT4G15475 70 / 1e-12 F-box/RNI-like superfamily protein (.1) AT1G21410 58 / 4e-09 SKP2A F-box/RNI-like superfamily protein (.1) AT1G77000 57 / 1e-08 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035160 [exp] 837 / 0 AT3G26810 894 / 0.0 auxin signaling F-box 2 (.1) Lus10035161 [exp] 639 / 0 AT3G26810 770 / 0.0 auxin signaling F-box 2 (.1) Lus10006738 [exp] 475 / 3e-164 AT1G12820 647 / 0.0 auxin signaling F-box 3 (.1) Lus10020086 [exp] 469 / 9e-162 AT3G62980 644 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10018426 [exp] 469 / 7e-160 AT3G62980 634 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10018425 [exp] 424 / 2e-144 AT3G62980 593 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10011262 [exp] 415 / 1e-140 AT3G62980 588 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10011261 [exp] 259 / 2e-85 AT1G12820 241 / 4e-77 auxin signaling F-box 3 (.1) Lus10011260 [exp] 192 / 1e-56 AT3G62980 397 / 2e-134 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G061600 [exp] 712 / 0 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1) Potri.001G323100 [exp] 712 / 0 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1) Potri.004G033900 [exp] 467 / 5e-161 AT1G12820 654 / 0.0 auxin signaling F-box 3 (.1) Potri.011G042400 [exp] 461 / 7e-159 AT3G62980 649 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.014G134800 [exp] 455 / 2e-156 AT3G62980 947 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.002G207800 [exp] 451 / 8e-155 AT3G62980 937 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.005G159300 [exp] 402 / 4e-135 AT5G49980 934 / 0.0 auxin F-box protein 5 (.1) Potri.002G102700 [exp] 400 / 4e-134 AT5G49980 911 / 0.0 auxin F-box protein 5 (.1) Potri.008G064400 [exp] 125 / 5e-31 AT2G39940 794 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Potri.010G192900 [exp] 124 / 2e-30 AT2G39940 790 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031991 pacid=23161328 polypeptide=Lus10031991 locus=Lus10031991.g ID=Lus10031991.BGIv1.0 annot-version=v1.0 ATGCTTTCCACTGTTCTAATAAAGATCACAGCTGTTTGTTTCTCTCAATTTTCCAAACCCAGAAATCTGAAGGAGCTGGACTTGCAAGAGAATGACGTTG AAGATCACAGAGGGCATTGGCTTAGCTGCTTCCCTGACAGCAGTACCTCTCTTGTTTCCCTCAATTTTGCATGCCTCAAAGGAGATATTAATTTAGCAGC CCTGGAGAGGCTTGTAGCAAGATCCCCCAACCTGAGGAGCTTGAGGCTAAGTCGTGCCGTGCCACTTGATGTGCTTCAGAGGATATTGATCCGTGCTCCC CAGTTGGTGGAGTTGGGTGTGGGTTCTTATCTACACGATCCAGAGTCAGAGTGTTACGATAATCTTGCGGCTGCCATTCAGAAGTGCAAGTCTGTTAGGA GTCTTTCTGGATTCTTGGATGTTGCTCCCCATTGCCTAGCAGCTTTCCATGTGATCTGCCCGAACTTAACCACCCTGAACTTGAGTTATGCCCCAGGAAT TCATGGTAGTGAGCTTATGAAGCTAATTCGTCACTGTAGGAAAGTTCAGCGATTATGGATACTGGATTGCATTGGTGATAAAGGACTCGAGGTTGTAGCT GATACTTGTAAAGATTTGGAGGAGTTGAGGGTTTTTCCTTCTGATCCCTTTGTCGGACAAGCAACTGTAACAGAAGAAGGCCTTGTTGCAATCTCAAGAG GATGCCGGAAGCTTAATTCAATACTGTACTTCTGTCAGCAGATGACAAATGCTGCACTGATAACAGTTGCCAAGAACTGTCCGAATTTCATAAGGTTCAG GCTATGCATTCTGGATCCCACAAAACCAGATGCTGCTACCCAGCAGCCACTGGATGAAGGTTTTGGGGCGATAGTTCGAGAATGCAAGGATCTGAAGCGC TTGTCACTTTCCGGCCTTCTGACCGACCAAGTTTTCCAGTACATCGGGATGTACGCTTCTCAGCTGGAGATGCTGTCAATAGCGTTTGCAGGGGACAGTG ACAAAGGGATGCAGTATGTGCTGGACGGGTGCAAGAAGCTGAGGAAGCTCGAGATAAGGGACAGCCCGTTTGGGAATGCAGCACTTCTCATGGATGTGGG GAAGTACGAGACAATGCGATCCCTTTGGATGTCGGCCTGTGATGTCACGCTTGGAGGCTGCAAAGTGTTAGCCAAGAGGATGCCGGGGCTGAATGTGGAG ATCATGAACGAGAATGATCAGATGGAGTTTGGGGATGATGATCGGCAAAAGGTGGACAAGATGTACCTGTATCGAACGCTGGCTGGACAAAGAAGAGATG CACCTGGATTCGTCTGGACACTGTAA
AA sequence Show only first row Show all	>Lus10031991 pacid=23161328 polypeptide=Lus10031991 locus=Lus10031991.g ID=Lus10031991.BGIv1.0 annot-version=v1.0 MLSTVLIKITAVCFSQFSKPRNLKELDLQENDVEDHRGHWLSCFPDSSTSLVSLNFACLKGDINLAALERLVARSPNLRSLRLSRAVPLDVLQRILIRAP QLVELGVGSYLHDPESECYDNLAAAIQKCKSVRSLSGFLDVAPHCLAAFHVICPNLTTLNLSYAPGIHGSELMKLIRHCRKVQRLWILDCIGDKGLEVVA DTCKDLEELRVFPSDPFVGQATVTEEGLVAISRGCRKLNSILYFCQQMTNAALITVAKNCPNFIRFRLCILDPTKPDAATQQPLDEGFGAIVRECKDLKR LSLSGLLTDQVFQYIGMYASQLEMLSIAFAGDSDKGMQYVLDGCKKLRKLEIRDSPFGNAALLMDVGKYETMRSLWMSACDVTLGGCKVLAKRMPGLNVE IMNENDQMEFGDDDRQKVDKMYLYRTLAGQRRDAPGFVWTL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10031991 [exp]	0	1
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Lus10028456 [exp]	6.9	0.7736
AT5G57450		ATXRCC3, XRCC3	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10004464 [exp]	7.5	0.7169
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10028265 [exp]	7.5	0.7650
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10009876 [exp]	9.9	0.7654
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Lus10011530 [exp]	13.4	0.7554
					Lus10027352 [exp]	16.4	0.7386
AT4G37480			Chaperone DnaJ-domain superfam...		Lus10019286 [exp]	17.9	0.7598
AT4G24800		ECIP1	EIN2 C-terminus Interacting Pr...		Lus10018085 [exp]	19.2	0.7717
AT4G00525			unknown protein		Lus10037852 [exp]	20.2	0.6837
AT1G48170			unknown protein		Lus10022781 [exp]	20.9	0.7086

Compare expression of checked genes

Lus10031991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.