Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02010 933 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 530 / 1e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 528 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 528 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 507 / 1e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G13650 498 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09950 491 / 7e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 478 / 6e-158 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G33170 483 / 5e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 474 / 9e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035164 [exp] 1655 / 0 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 514 / 5e-170 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 514 / 5e-169 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 513 / 1e-168 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013578 [exp] 509 / 7e-166 AT1G16480 1036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004892 [exp] 498 / 9e-164 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 502 / 4e-163 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030908 [exp] 501 / 8e-161 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 500 / 3e-160 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G237100 [exp] 1069 / 0 AT3G02010 967 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 562 / 0 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 552 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 544 / 0 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 534 / 1e-178 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G047800 [exp] 530 / 2e-175 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 511 / 1e-170 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.015G018700 [exp] 508 / 1e-167 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 512 / 4e-167 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G012500 [exp] 498 / 8e-166 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10031994 pacid=23161058 polypeptide=Lus10031994 locus=Lus10031994.g ID=Lus10031994.BGIv1.0 annot-version=v1.0 ATGATCCCATGGCTACCGTGCAGAGCGACCCCGCTCAGAAAGCTTGCATCTTTAGCAACCTCCCAGTTCCCCAGGAGCCACCACCGACCACCCGATGCTC GACTGGTCAAAACGGGGTTTGACCCAAGCATTTCCCGCTTCAATTTCCAGGTCAAGGAGCTGCTCAACAGAGGTGACCTTACACAAGCCCGCCAAGTGTT CGATCAAATGCCTCAAACCAACACTGTCACCACCAACTTGTTGATTTCCGGGTACGTGAAATCTGGCAATTTGTCCGTTGCCAGACAACTGTTTGATGAC ATGGTGGAACAACGCACTGCTGTGTCTTGGACCATTCTGATTGGTGGCTACTCGCTGATTGGTCGATCTGCAGAGGCCTTCCAGCTTTTCGTTGAGATGT GTAGATTCGGGACTGAGCCTGATCATGTTACTTTCGCGACTCTGTTATCCGGGTTCAATTATGGTGATGGAATGGTTAGTCGTGAACTGGATCAGCTTCA CTGCCTCGTTGTTAAACTGGGACATAAGTCTACTGCTATGGTTTGCAATTCTTTGATCGACGCGTACTGCAAGACCGGCCGGATCGAGAATGCTCTCAAA CTGTTCGAGGAAATGCCTCAAAGGGATACTGTCAGCTTCAATGCATTGATGACTGGGTACGTAAGAAACAGACGGAACCAAGAGGTAGTAGAGCTTTTCG CAGAAATGCAAAACTCGGAGATTGCACTTTCGGATTTCACATTCGCAGCAGTTATCGGTGCATGTGTTGGCTTAGATAACCTCGTATTTGGTCAGCAAGT TCATGGCTTGACAGTGAAGAGCAGTTTCATTCTCGACATGTTCGTAGGCAATGCGTTGCTAGATTTTTATTCGAAACACGGATGTGTTTACGAAGCTTCG AAACTATTCCGTGAGATGCCTGAACTGGACTGTGTATCTTATAACGTGCTGGTTACAGCTTTTGCATGGGTCGGGCAATTCCGCGAGTCTATTGAACTCT TCAGGGAGCTCCAGCATACGAAATTCGAATGCAGGAAGTTCCCTTTCTCAACCATGTTGAGTATAGCTGCTAATAAACTGGACTTGCAAATGGGTCAGCA ACTCCATTCTCTTACTATCGCAACAGAGGCTGTTTCGGATGTCCTAGTGGCTAATGCATTGGTCGATATGTATGCGAAGTGCGACAAGTTCAAGGAAGCT CGAAGAATATTCGGGGAACTCAGTGATAGAAGCACGGTTCCATGGACGGCCATGTTATCAGCGAATATCCAGAAGGGACTTTACGAGGAAGGTCTGCAGC TTTTCAAGGAGATGCTTAAGGAGGGCATAAGTCCGGACCAGGCCACTTTTGCTAGCGTCCTGAAGGCCTCTGCAAGTTTGGCTTCCATCTCACTTGGGAA GCAGCTACACTGTTGTGCCATAAGAACTGGGTTTCTAGCAAATGTTTACTGTGGCAGTGCGCTTGTAGATATGTACGCAAAATGCGGATCTACGAAAGAT GCAGTGCAAAGTTTCAAAGAGATGCCCGATAAAAACGTGGTATCCTGGAACGCAGTAATCTCTGCTTATGCACATGACGGTGATGGAGCAGCCACTCTCC AATCGTTCGAAAATATGGTTTCCTCAGGGTACATGCCAGATTCGGTGAGTTTCTTGAGCGTTCTGGCTGCTTGTAGCCACTCTGGATTGGTTGAAGAAGG GTTCCAGTACTTCAGCACCATGACTGAAGTGTATAAACTAGTTCCCAAGAGAGAGCACTATGCCTCAATGATTGATTTGTTATGCAGGCGTGGGAAATTC AAGGAAGCAGAGACGTTGATGGGCGAAATGCCTTTCGAGCCTGACGAGATCTTGTGGTCATCTGTTTTGAACTCGTGCAGGATTCATAAGAACCACCAGT TAGCTAGCAAAGCAGCACAGAAGCTGTTTAGTATGGAAACCCTCAAAGATGGAGCGCCTTACATCACCATGTCTAACATACTTGCAGCGGCAGGACGGTG GGACGATGTAGCGAATGTGAAGAAGGCGATGAGGGAACGAGGAGTCAGAAAGGTTCCGGCTTATAGTTGGGTCGAAATCAATCATAAGGTCCATGTGTTT TCCTCCAACGACAAGAGCCATCCAGAAACAAGAGAGATCATTCGAAAGCTTGACGAGTTGGTAGAGAAAATGCAGAAACAAGGTTATGCACCAGATACAA GTTGTGCTCTCCAGAACGTGGAACAGAACATCAAAGTTGAGTCCCTCAAGTACCATAGTGAACGCCTGGCAATAGCATTTGCTTTGCTCCACTCGCCGGA AGGATGGCCCATCTTGATCATGAAGAACCTGCGAGCTTGTGCAGACTGCCATGCTGCAATCAAGGTAATCTCAAAGATTGTTGGACGGGAAATTACAGTT CGAGATTCAAGCAGGTTCCACCGTTTCAAAGATGGGGTTTGCTCCTGTGGTGATTACTGGTAA
AA sequence Show only first row Show all	>Lus10031994 pacid=23161058 polypeptide=Lus10031994 locus=Lus10031994.g ID=Lus10031994.BGIv1.0 annot-version=v1.0 MIPWLPCRATPLRKLASLATSQFPRSHHRPPDARLVKTGFDPSISRFNFQVKELLNRGDLTQARQVFDQMPQTNTVTTNLLISGYVKSGNLSVARQLFDD MVEQRTAVSWTILIGGYSLIGRSAEAFQLFVEMCRFGTEPDHVTFATLLSGFNYGDGMVSRELDQLHCLVVKLGHKSTAMVCNSLIDAYCKTGRIENALK LFEEMPQRDTVSFNALMTGYVRNRRNQEVVELFAEMQNSEIALSDFTFAAVIGACVGLDNLVFGQQVHGLTVKSSFILDMFVGNALLDFYSKHGCVYEAS KLFREMPELDCVSYNVLVTAFAWVGQFRESIELFRELQHTKFECRKFPFSTMLSIAANKLDLQMGQQLHSLTIATEAVSDVLVANALVDMYAKCDKFKEA RRIFGELSDRSTVPWTAMLSANIQKGLYEEGLQLFKEMLKEGISPDQATFASVLKASASLASISLGKQLHCCAIRTGFLANVYCGSALVDMYAKCGSTKD AVQSFKEMPDKNVVSWNAVISAYAHDGDGAATLQSFENMVSSGYMPDSVSFLSVLAACSHSGLVEEGFQYFSTMTEVYKLVPKREHYASMIDLLCRRGKF KEAETLMGEMPFEPDEILWSSVLNSCRIHKNHQLASKAAQKLFSMETLKDGAPYITMSNILAAAGRWDDVANVKKAMRERGVRKVPAYSWVEINHKVHVF SSNDKSHPETREIIRKLDELVEKMQKQGYAPDTSCALQNVEQNIKVESLKYHSERLAIAFALLHSPEGWPILIMKNLRACADCHAAIKVISKIVGREITV RDSSRFHRFKDGVCSCGDYW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10031994 [exp]	0	1
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	4.0	0.8669
AT5G14580			polyribonucleotide nucleotidyl...		Lus10008763 [exp]	6.8	0.8792
AT2G45030			Translation elongation factor ...		Lus10039840 [exp]	7.9	0.8525
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10013991 [exp]	15.5	0.8492
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10017896 [exp]	20.9	0.8572
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10020081 [exp]	21.0	0.8113
AT5G02050			Mitochondrial glycoprotein fam...		Lus10024351 [exp]	21.3	0.8533
AT1G34380			5'-3' exonuclease family prote...		Lus10039380 [exp]	24.2	0.7980
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10040869 [exp]	25.1	0.7912
AT5G55610			unknown protein		Lus10004412 [exp]	26.3	0.8540

Compare expression of checked genes

Lus10031994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.