Plant FIBer expression Database

Lus10031995 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G31410 166 / 3e-52 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035165
[exp]
280 / 2e-97 AT2G31410 196 / 3e-64 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G145600
[exp]
196 / 3e-64 AT2G31410 169 / 3e-53 unknown protein
Potri.002G237000
[exp]
196 / 6e-64 AT2G31410 200 / 2e-65 unknown protein
PFAM info
Representative CDS sequence
>Lus10031995 pacid=23161263 polypeptide=Lus10031995 locus=Lus10031995.g ID=Lus10031995.BGIv1.0 annot-version=v1.0
ATGGCCTGCACCATTGATTTCCGTAACCTAGACGAAGGCTTCGGCGGCAAGACCGCCAAGCGAAAGCGCGAGGTCGAAGCCATGGCTGCCGCTGGTGGCG
GAAACGACGATTCCATGGAGGTCGACACGCTTCCTCCGCCGGCGAAGCGTTCTGCGGTCTCGTCCGCGGAGAATCCCGACAAGCCGGTGTTCGGGAACCC
TACTTACGACGGAGTTATAGCCGGAAGGGTTTCTGGACGGAAGTGGAAGCAGGTCAGGCCTCGTCGTTCGTCTGCCAAGGTGGTGAGCAGGGTAGGGACA
CCGTTCGAGGAAAGGAAGAAGGAGAAGGAGATCAAGAAGGCTTACAGAGAGAGGGTGAACGAGCTGAAGGAAGGGATAAGGACGAACAAACAGGGGAAGA
GGAAGGCTAGGGAAGAGAGGGAGAAGAAGAAGAAGGAGAATATATTGAAGTCTGGTACTAAGTTGCAGAAGATCTCCAATCCCAAGACTCTGAAGAAGAT
CGCCAAGTCTAAAGATCGGAAATCGCTCAAGATCGTTCCTGATGATGTATTCAATAAGAAGAAGAACAGCAACAGCAAGAAGTAG
AA sequence
>Lus10031995 pacid=23161263 polypeptide=Lus10031995 locus=Lus10031995.g ID=Lus10031995.BGIv1.0 annot-version=v1.0
MACTIDFRNLDEGFGGKTAKRKREVEAMAAAGGGNDDSMEVDTLPPPAKRSAVSSAENPDKPVFGNPTYDGVIAGRVSGRKWKQVRPRRSSAKVVSRVGT
PFEERKKEKEIKKAYRERVNELKEGIRTNKQGKRKAREEREKKKKENILKSGTKLQKISNPKTLKKIAKSKDRKSLKIVPDDVFNKKKNSNSKK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G31410 unknown protein Lus10031995
[exp]
0 1
AT2G36620 RPL24A ribosomal protein L24 (.1) Lus10024560
[exp]
1.0 0.8886
AT5G26800 unknown protein Lus10031426
[exp]
2.8 0.8681
AT1G54310 S-adenosyl-L-methionine-depend... Lus10001763
[exp]
5.1 0.7965
AT2G34160 Alba DNA/RNA-binding protein (... Lus10019423
[exp]
6.0 0.7921
AT1G16740 Ribosomal protein L20 (.1) Lus10006327
[exp]
6.7 0.7938
AT1G53850 PAE1, ATPAE1 ARABIDOPSIS 20S PROTEASOME ALP... Lus10003936
[exp]
7.4 0.8192
AT5G27470 seryl-tRNA synthetase / serine... Lus10017409
[exp]
9.5 0.8145
AT3G52040 unknown protein Lus10039586
[exp]
10.4 0.8239
AT3G58660 Ribosomal protein L1p/L10e fam... Lus10024134
[exp]
11.3 0.7938
AT5G65860 ankyrin repeat family protein ... Lus10032850
[exp]
16.1 0.8060

Lus10031995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.