Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14030 216 / 8e-72 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035166 [exp] 282 / 5e-98 AT5G14030 264 / 7e-91 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) Lus10012565 [exp] 254 / 5e-87 AT5G14030 254 / 5e-87 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) Lus10041525 [exp] 240 / 1e-79 AT5G14030 216 / 8e-70 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G323400 [exp] 228 / 7e-77 AT5G14030 215 / 2e-71 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) Potri.017G061900 [exp] 228 / 3e-76 AT5G14030 210 / 6e-69 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF05753 [flax] [poplar] TRAP_beta Translocon-associated protein beta (TRAPB)
Representative CDS sequence Show only first row Show all	>Lus10031996 pacid=23161125 polypeptide=Lus10031996 locus=Lus10031996.g ID=Lus10031996.BGIv1.0 annot-version=v1.0 ATGGCGATCCCAGTGCTTAGCTCTCTAGTTTCTGTGCTGCTCATTCTGCTCTTCGTCTCCTCGACGACCTTAGCTGCCACTGATGTCCCTTTCATCGTAG CTCACAAGAAGGCCACTCTCAACAGGCTCAAATCCGGCGCTGAACGCGTCTCTGTCTCCATCGATATCTACAACCAAGGATCCTCGACAGCTTATGATGT GAGTCTTGTCGATGATCACTGGCCTCAAGATTTATTTGATGTTCTGAGCGGTAACGTTTCACAATCATGGGAACGTCTGGATTCTGGTGGTTTGTTGTCA CATTCTTTTGAACTCGAGGGAAAAGTGAAGGGCGTGTTCTACAGTGCCCCAGCTGTTATTACATTCCGCATCCCTACCAAGGCTGTTTTACAGGAGGCAT TCTCAACTCCAATTATGCCCCTCGATATTCTGGCCGACAGACCTACTGAGAATAAGCTTGATTTGAGGTTGTTGGCGAAGTATGGATCTTTGGTATCGGT CATTTCAATCGTGGTTCTGTTTGTGTACCTTGTGAGCACTCCGTCCAAATCTAGTGGTCCGAAAGGGAGCAAGAAGAAGCGTTAA
AA sequence Show only first row Show all	>Lus10031996 pacid=23161125 polypeptide=Lus10031996 locus=Lus10031996.g ID=Lus10031996.BGIv1.0 annot-version=v1.0 MAIPVLSSLVSVLLILLFVSSTTLAATDVPFIVAHKKATLNRLKSGAERVSVSIDIYNQGSSTAYDVSLVDDHWPQDLFDVLSGNVSQSWERLDSGGLLS HSFELEGKVKGVFYSAPAVITFRIPTKAVLQEAFSTPIMPLDILADRPTENKLDLRLLAKYGSLVSVISIVVLFVYLVSTPSKSSGPKGSKKKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14030			translocon-associated protein ...		Lus10031996 [exp]	0	1
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10012351 [exp]	9.3	0.7156
AT2G44050		COS1	coronatine insensitive1 suppre...		Lus10018133 [exp]	27.8	0.6383
AT5G14230			unknown protein		Lus10022339 [exp]	68.4	0.6307
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10023113 [exp]	94.0	0.6199
AT1G42480			unknown protein		Lus10030732 [exp]	98.3	0.5806
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10023337 [exp]	103.7	0.6278
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Lus10022038 [exp]	119.4	0.6003
AT2G37470			Histone superfamily protein (....		Lus10006484 [exp]	131.6	0.5849
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10023053 [exp]	199.5	0.5773
AT5G14230			unknown protein		Lus10041588 [exp]	260.6	0.5725

Compare expression of checked genes

Lus10031996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.