Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14020 486 / 6e-172 Endosomal targeting BRO1-like domain-containing protein (.1) AT1G73390 310 / 3e-102 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) AT1G17940 296 / 3e-97 Endosomal targeting BRO1-like domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035167 [exp] 782 / 0 AT5G14020 497 / 4e-176 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10012563 [exp] 657 / 0 AT5G14020 486 / 9e-172 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10041527 [exp] 654 / 0 AT5G14020 483 / 6e-171 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10031881 [exp] 322 / 9e-107 AT1G73390 704 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10042289 [exp] 318 / 2e-105 AT1G73390 686 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10031313 [exp] 317 / 5e-105 AT1G73390 690 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10026368 [exp] 265 / 2e-84 AT1G73390 613 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G062000 [exp] 619 / 0 AT5G14020 524 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Potri.001G323600 [exp] 593 / 0 AT5G14020 521 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Potri.004G067400 [exp] 307 / 4e-101 AT1G73390 647 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Potri.017G154200 [exp] 292 / 7e-96 AT1G73390 563 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03097 [flax] [poplar] BRO1 BRO1-like domain
Representative CDS sequence Show only first row Show all	>Lus10031997 pacid=23161193 polypeptide=Lus10031997 locus=Lus10031997.g ID=Lus10031997.BGIv1.0 annot-version=v1.0 ATGGGGTGCACTACTTCTGTATATGCAATTGGAAAGAAGAAGAACAAGCCACTTATACCAGAAGCTGTAATACATGTTCCTTCAATCAGAATTCCAGCTC AGTCTGATCTTCAGAGAGCTCTTAAAGGTTTGGTTCCTCGAGATCTTCTTGATCGATTAGCTGGTCTTCGGAGCCAGATTGCGTTGATTTCTGAGGATAC AGGTGGATCTGCTATAGCAGAGTTGAAGAGAACATTAGAGGAGTACTTGTCTGTGCTACTTGGACTAACTAAGAAAGAACATGGACTTGAGGACTTGGTT GAGTTCAAGTGGAAAAACTTGGAAAATGGTAAACAGGAAGCAGGATTAGCAAACTGCTGGTTTGAAGTAGTATCAGTGGTTCATATGATGGCAATGCTGA CATTATCTGAGGCTAACTCATTAATGATTCCAAAGGCTTATTCTGGTTCAACCATAAGAGTTGTGTCTTCAGACTGTAATAGGGAAGCTATTGATTTACT GCTAAAGGCATCAGGCTACTTGGAGTTCTGCATCCATGAAGTATTAACTCATATTCCACCAGAAATCAAGAAAAGTTTTCCAAAGGACTTGCAAGATGGT GTGCTTGATGCCATATCAATTCAAGCACTAGGACAGGGGACAGAAATCCAACTTGGTTTAGCTATTGAAAGCCAGAATGCAAGTTTACCAGTTAAAAGGA GGCTGGCATGTGAACAGCTGATCTACTTCAGTCAGGCTTATCAGAGCTTGTTAGGAGCTGACATGAGCAACGGGTATGGAAAGAAGCATCTCAGCTTCAT CAAGTGGAAGTTCCTTGAATCAAAGGCTGCAGCATATTACTACCATGGACTCGTCGTTGACAAAGGGAGTGAACCATCCTGCCATGTGAGTGCAGTTTGT TGTTTCCTTGCTGCACAAGGACTTTTGACAGAGAGTAAAAGAGCTTGCTTAAGCTTTTGCCTTTCACCTCCCATTACCAGATCTTCTCCACAATGGGGAG TCATGAAGCATTTACATAAAAAAATTCCAGAAGTTGCTTGCAGGAAGTCTGAAATGTATGGCTACCTGTTGGAGGAAGAAAAAGCTCTACAAGTATTGCC TGAGCTACCGGATTTTCAGCTGTCGTTAAGCCCAGACGAATATGAACCGCCTGAGCCGGATTCAGCTTGGGACAGTAAGAGCTGGGAAATCGAGAAGCAG CCCTTAAGAGATCACCTCCAAGACAGTGAAGGAGAAGATAACTGA
AA sequence Show only first row Show all	>Lus10031997 pacid=23161193 polypeptide=Lus10031997 locus=Lus10031997.g ID=Lus10031997.BGIv1.0 annot-version=v1.0 MGCTTSVYAIGKKKNKPLIPEAVIHVPSIRIPAQSDLQRALKGLVPRDLLDRLAGLRSQIALISEDTGGSAIAELKRTLEEYLSVLLGLTKKEHGLEDLV EFKWKNLENGKQEAGLANCWFEVVSVVHMMAMLTLSEANSLMIPKAYSGSTIRVVSSDCNREAIDLLLKASGYLEFCIHEVLTHIPPEIKKSFPKDLQDG VLDAISIQALGQGTEIQLGLAIESQNASLPVKRRLACEQLIYFSQAYQSLLGADMSNGYGKKHLSFIKWKFLESKAAAYYYHGLVVDKGSEPSCHVSAVC CFLAAQGLLTESKRACLSFCLSPPITRSSPQWGVMKHLHKKIPEVACRKSEMYGYLLEEEKALQVLPELPDFQLSLSPDEYEPPEPDSAWDSKSWEIEKQ PLRDHLQDSEGEDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14020			Endosomal targeting BRO1-like ...		Lus10031997 [exp]	0	1
AT2G03350			Protein of unknown function, D...		Lus10036804 [exp]	3.5	0.9789
					Lus10024349 [exp]	6.3	0.9725
AT5G20950			Glycosyl hydrolase family prot...		Lus10043457 [exp]	7.0	0.9754
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10013693 [exp]	7.1	0.9656
AT5G11420			Protein of unknown function, D...		Lus10025753 [exp]	7.3	0.9765
AT1G64650			Major facilitator superfamily ...		Lus10000336 [exp]	7.9	0.9717
AT2G32970			unknown protein		Lus10030016 [exp]	9.4	0.9708
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	9.5	0.9716
AT2G04220			Plant protein of unknown funct...		Lus10019467 [exp]	10.1	0.9807
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10018031 [exp]	11.5	0.9626

Compare expression of checked genes

Lus10031997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.