Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15620 80 / 1e-18 Uncharacterised protein family (UPF0497) (.1) AT4G25040 73 / 4e-16 Uncharacterised protein family (UPF0497) (.1) AT4G15630 72 / 2e-15 Uncharacterised protein family (UPF0497) (.1) AT4G03540 61 / 1e-11 Uncharacterised protein family (UPF0497) (.1) AT1G03700 60 / 2e-11 Uncharacterised protein family (UPF0497) (.1) AT5G15290 60 / 3e-11 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) AT1G17200 57 / 7e-10 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) AT2G27370 54 / 7e-09 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) AT3G06390 47 / 1e-06 Uncharacterised protein family (UPF0497) (.1) AT2G36100 45 / 6e-06 CASP1 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035168 [exp] 370 / 2e-132 AT4G15620 78 / 8e-18 Uncharacterised protein family (UPF0497) (.1) Lus10032005 [exp] 236 / 2e-80 AT4G15620 65 / 1e-13 Uncharacterised protein family (UPF0497) (.1) Lus10012562 [exp] 194 / 1e-62 AT4G15620 77 / 1e-17 Uncharacterised protein family (UPF0497) (.1) Lus10041528 [exp] 168 / 2e-53 AT4G15620 74 / 5e-17 Uncharacterised protein family (UPF0497) (.1) Lus10032548 [exp] 95 / 4e-24 AT1G03700 62 / 3e-14 Uncharacterised protein family (UPF0497) (.1) Lus10043192 [exp] 77 / 6e-18 AT4G25040 61 / 3e-12 Uncharacterised protein family (UPF0497) (.1) Lus10012809 [exp] 72 / 1e-15 AT4G15630 179 / 4e-57 Uncharacterised protein family (UPF0497) (.1) Lus10033971 [exp] 69 / 1e-14 AT4G15630 162 / 1e-51 Uncharacterised protein family (UPF0497) (.1) Lus10042471 [exp] 62 / 7e-12 AT1G17200 242 / 6e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G062100 [exp] 130 / 6e-38 AT4G25040 82 / 6e-20 Uncharacterised protein family (UPF0497) (.1) Potri.001G323700 [exp] 118 / 3e-33 AT4G15620 75 / 8e-17 Uncharacterised protein family (UPF0497) (.1) Potri.015G103600 [exp] 100 / 1e-26 AT4G25040 90 / 9e-23 Uncharacterised protein family (UPF0497) (.1) Potri.012G104300 [exp] 99 / 1e-25 AT4G25040 97 / 7e-26 Uncharacterised protein family (UPF0497) (.1) Potri.019G100300 [exp] 72 / 7e-16 AT1G03700 150 / 6e-47 Uncharacterised protein family (UPF0497) (.1) Potri.011G052100 [exp] 71 / 2e-15 AT4G03540 100 / 2e-27 Uncharacterised protein family (UPF0497) (.1) Potri.013G131700 [exp] 71 / 5e-15 AT1G03700 159 / 9e-50 Uncharacterised protein family (UPF0497) (.1) Potri.004G043300 [exp] 64 / 5e-13 AT4G03540 103 / 2e-28 Uncharacterised protein family (UPF0497) (.1) Potri.001G436400 [exp] 60 / 5e-11 AT1G17200 245 / 1e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.008G205100 [exp] 56 / 2e-09 AT4G15630 144 / 1e-43 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10031998 pacid=23161225 polypeptide=Lus10031998 locus=Lus10031998.g ID=Lus10031998.BGIv1.0 annot-version=v1.0 ATGGAAGGTGGGAGCATCAGACAAGGATCAGCAGCAGCCAAGACATCATCAAGATCAGCACCATCAGCCGCTACTAGCAGAGGTACTAATCAGCAGCATC AGATGCAACAAAGAGCTGGCTTGACATTGCTAATGGCTCAACTCGCAATGCTCAAGGTATTCGCCATAGCCTTCACCGTCTCTGCAATCTGCATTTTTCA CACCAGCGGCCAGAATGTCCTCGTCTACAACATCCCTTTCTCCGCTCGCTACTCCTACTCTTCCGCTTACAAGTTTCTGGTCGATGCGAATATAATCGTT TGCGCATCCTCGGTGGTGTCTCTGATCTGTATCTGGGTGCTGCGGAAGAACATCTCTCCACCTCAGCTCCCATTCAGACTTTTCTACCTCCTACTCCATG ACCTTGTGATGATGGGGCTAATGACGGCTGGGTGTGCAGCAGCATCAGCAGTAGGACTGGTGGGATACAATGGGATCGACAAGATTGGTTGGGTGGCAAT CTGTGGCAACGTTACCAAGTTCTGTCACAAAATGCTTGCTGCTGTTATCTTGTCGTATTTGTCTCTAGTCACTTACTTGGCTCTCACCTTTATCTCTGCC TTCAAACTGGCTTCCATTTCTTCTCACTGA
AA sequence Show only first row Show all	>Lus10031998 pacid=23161225 polypeptide=Lus10031998 locus=Lus10031998.g ID=Lus10031998.BGIv1.0 annot-version=v1.0 MEGGSIRQGSAAAKTSSRSAPSAATSRGTNQQHQMQQRAGLTLLMAQLAMLKVFAIAFTVSAICIFHTSGQNVLVYNIPFSARYSYSSAYKFLVDANIIV CASSVVSLICIWVLRKNISPPQLPFRLFYLLLHDLVMMGLMTAGCAAASAVGLVGYNGIDKIGWVAICGNVTKFCHKMLAAVILSYLSLVTYLALTFISA FKLASISSH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15620			Uncharacterised protein family...		Lus10031998 [exp]	0	1
AT5G38195			Bifunctional inhibitor/lipid-t...		Lus10033573 [exp]	1.4	0.8994
AT3G49400			Transducin/WD40 repeat-like su...		Lus10008595 [exp]	2.4	0.9086
					Lus10029057 [exp]	5.5	0.8779
					Lus10024122 [exp]	6.0	0.8684
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10017925 [exp]	6.9	0.8391
					Lus10005392 [exp]	10.2	0.8038
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10018101 [exp]	10.7	0.8094
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008713 [exp]	16.4	0.6839
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10007650 [exp]	17.0	0.8408
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10028814 [exp]	19.7	0.8244

Compare expression of checked genes

Lus10031998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.