Plant FIBer expression Database

Lus10031999 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G26890 346 / 3e-110 unknown protein
AT5G41110 334 / 5e-106 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035170
[exp]
1132 / 0 AT3G26890 388 / 1e-126 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G324700
[exp]
357 / 2e-113 AT3G26890 415 / 1e-135 unknown protein
Potri.015G103500
[exp]
290 / 2e-88 AT3G26890 231 / 2e-66 unknown protein
Potri.012G104200
[exp]
270 / 4e-81 AT5G41110 302 / 2e-93 unknown protein
PFAM info
Representative CDS sequence
>Lus10031999 pacid=23161153 polypeptide=Lus10031999 locus=Lus10031999.g ID=Lus10031999.BGIv1.0 annot-version=v1.0
ATGGGTTTGCCTCAAGTTTCATCAGCTGATGGCACGAATGTGTTTACGATAGCCCCACCTGGTACTTTCATTCGAAGCTCGCCTCGGTCTTCTAGCGTGG
GAACTTGTGACTTGGACGGATTAGGTTGCGAGGGTATGAGCAGAAGGATGGTTAGTGGGGATACTCTTAGTTCTTCAGGCAATTTCCCAGAGAGAACCTC
TTTGCCAGTTTCAAACTTTAGGAATGCTGCATTCAGTTTCGGGGAGGCGGAGTTTGGTTACAGTGTCAACAAAACAACGCGAGTTAGCTCCAACACTGAG
ACTGTTAGAAATGTCCAGAAGCCTGCTGCAAGGATTGTGGGGTTTGAATCACGGGGAACAAGTTCTTGTTACAATGTACTGCCTGAAGGTCCCTCTGGAT
TATATGTTCATCCGGCTTCAGGTGCTGATGGTAATGTTACTGAAACAGAGTTGAGTGTGTCAACTGTCAAGAAGCGGCTATTGTCGCCATTGAGTGGCAT
GCTATCTGCAAAGCAATTCAATGGTGATTCTCTGAATATTGGTTCTCATGCTTCGCAAATGCATTATGATAACAAGAAGGCAAATGTTGGAACCAAAGTT
AATTTCGCTGTGCCATCATGCCACATTACTAGTTGCTTGGAACAGAAGGAAATGATGTATAATAGTAGTTCAAAGACGTATGCTACAGATGGCCCTTTGC
TCGATAACAAAGAATTCAATGATGGAAGATCTCGAATAAAAGCAATATCATTATCCCCCAAGAAGTTGAGTTCTCCTCTTTCTATGTCTCCTCTAGGCCC
TAGATTTCCTGAAAGATTCAAAAGCCTAAGAGCATGCTTGGATTTCAATAACAGGGAATCACTCCATCAGCGTGATGACTCTTGCTTTGTGTTTGGTTCA
GAAGAAGTAGGCAACATTTCAAGTAGATCACTTGAAGAAGATGATCTGTTTTGCAAAGAATTCCAGTCATGTTCTCCTGATGACTTGGGCTGGTCTCTAT
TCCATGGATCGGCTCCATCCCACGGCATCAAGTTTGTTAGAAGTCTGAGTGGTCTCTCTGTTAGAAGGTCTTTGGTTGGATCGTTTGAAGAGTCGCTATT
ATCTGGAAGGTTTTTCTCGGGAAAATGCACTCAGAAAATAGATGGTTTCCTTGCTGTATTAAGCATTACCGGAGGGAACTTCTCACCACAATCACAGAAG
CTCCCATTTTCAGTTACCAGTGTACATGAAGATTGTCATTTATTGTACTACGCATCAATAGATCTACCTGGGAACTCATCGTCGAATAAGCAAAGAGGGA
TCAGATGGAGTAAAGATGTGAATAATGGTGATTCACAAACTGTTAGGAGCCGCTTGCGTGTTCCTGTCAAAGGACGGATACAGCTGGTTCTCAGCAACCC
TGAAAGGACGCCTCTACACACCTTCCTTTGCAACTATGATTTGAGTGATATGCCAACCGGTACCAAGACCTTTCTGCGGCAGAAGGTGACCCTTGCTTCT
GGGACAAGTCTGTCGGAGTCGAAATTGGAGCAGATGGGCTCAGAGAAGAAGGTTAGCAACAACGGATGCAAGAAATCATCTAGGGAGGAGGACGATCCAT
GCAGAAAATCAAGTGATCATCAAATGGGTGTAAAGATCAATGAGCATAGCCCTCGTGGAGGATGTGGGCCTCTCCGTTACGCACTTCATCTTCGTTTCTT
GTGCCCTTCGCCCAAAAGATCTCCTAGCAAGGCAGAGAAGTCGCCGAATGCTGGAGTTTCACGTAATGTAGCATCAGGAGGGGATGACCGTAGGTTCTAC
TTGTACAATGACCTGAAGGTGGTGTTTCCTCAGCGCCATACTGATGCCGATGAGGGAAAGTTGAATGTGGAGTATCATTTCCCAGAAGATCCAAGATATT
TCAACATCACCAGCTGA
AA sequence
>Lus10031999 pacid=23161153 polypeptide=Lus10031999 locus=Lus10031999.g ID=Lus10031999.BGIv1.0 annot-version=v1.0
MGLPQVSSADGTNVFTIAPPGTFIRSSPRSSSVGTCDLDGLGCEGMSRRMVSGDTLSSSGNFPERTSLPVSNFRNAAFSFGEAEFGYSVNKTTRVSSNTE
TVRNVQKPAARIVGFESRGTSSCYNVLPEGPSGLYVHPASGADGNVTETELSVSTVKKRLLSPLSGMLSAKQFNGDSLNIGSHASQMHYDNKKANVGTKV
NFAVPSCHITSCLEQKEMMYNSSSKTYATDGPLLDNKEFNDGRSRIKAISLSPKKLSSPLSMSPLGPRFPERFKSLRACLDFNNRESLHQRDDSCFVFGS
EEVGNISSRSLEEDDLFCKEFQSCSPDDLGWSLFHGSAPSHGIKFVRSLSGLSVRRSLVGSFEESLLSGRFFSGKCTQKIDGFLAVLSITGGNFSPQSQK
LPFSVTSVHEDCHLLYYASIDLPGNSSSNKQRGIRWSKDVNNGDSQTVRSRLRVPVKGRIQLVLSNPERTPLHTFLCNYDLSDMPTGTKTFLRQKVTLAS
GTSLSESKLEQMGSEKKVSNNGCKKSSREEDDPCRKSSDHQMGVKINEHSPRGGCGPLRYALHLRFLCPSPKRSPSKAEKSPNAGVSRNVASGGDDRRFY
LYNDLKVVFPQRHTDADEGKLNVEYHFPEDPRYFNITS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G26890 unknown protein Lus10031999
[exp]
0 1
AT3G26100 Regulator of chromosome conden... Lus10006242
[exp]
5.0 0.9438
AT5G51070 SAG15, CLPD, ER... SENESCENCE ASSOCIATED GENE 15,... Lus10043013
[exp]
9.4 0.9192
AT1G56090 Tetratricopeptide repeat (TPR)... Lus10031774
[exp]
10.5 0.9373
AT1G30500 CCAAT NF-YA7 "nuclear factor Y, subunit A7"... Lus10023358
[exp]
10.8 0.9211
AT2G41430 LSR1, CID1, ERD... CTC-Interacting Domain 1, dehy... Lus10042014
[exp]
11.2 0.9194
AT3G30390 Transmembrane amino acid trans... Lus10031964
[exp]
14.8 0.9286
AT2G26000 BRIZ2 BRAP2 RING ZnF UBP domain-cont... Lus10035023
[exp]
15.7 0.9248
AT1G15860 Domain of unknown function (DU... Lus10039198
[exp]
15.7 0.9119
AT3G26935 DHHC-type zinc finger family p... Lus10022451
[exp]
15.8 0.9238
AT3G26935 DHHC-type zinc finger family p... Lus10016754
[exp]
17.7 0.9252

Lus10031999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.