Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26900 129 / 1e-35 ATSKL1 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3) AT2G21940 69 / 2e-13 ATSK1 shikimate kinase 1 (.1.2.3.4.5) AT4G39540 61 / 1e-10 ATSK2 shikimate kinase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035171 [exp] 379 / 2e-133 AT3G26900 203 / 1e-64 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3) Lus10035843 [exp] 60 / 5e-10 AT2G21940 304 / 5e-103 shikimate kinase 1 (.1.2.3.4.5) Lus10036626 [exp] 57 / 9e-09 AT5G64860 482 / 1e-165 disproportionating enzyme (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G062800 [exp] 152 / 3e-44 AT3G26900 291 / 9e-99 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3) Potri.005G084600 [exp] 69 / 4e-13 AT2G21940 304 / 2e-103 shikimate kinase 1 (.1.2.3.4.5) Potri.007G081000 [exp] 66 / 3e-12 AT2G21940 323 / 9e-111 shikimate kinase 1 (.1.2.3.4.5) Potri.002G061100 [exp] 55 / 1e-08 AT2G21940 224 / 2e-72 shikimate kinase 1 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01202 [flax] [poplar] SKI Shikimate kinase
Representative CDS sequence Show only first row Show all	>Lus10032000 pacid=23161088 polypeptide=Lus10032000 locus=Lus10032000.g ID=Lus10032000.BGIv1.0 annot-version=v1.0 ATGGAGGTTGTTAGCAATCCTACTACTACCATTACTCATTTCTTCTTCTCTTATTATTCCGGCGGGTTTCAATTCCCGCCTCTTTCCAATTCTCTCGTCC GTTTCCCTAAAGCTTCTTTCACTCCCACTTCTCCTTCTGTTGTCTCGCTCCGCAAACCTATCCCCATCACCACCATCAATCGCGCTCTTACGGGTGACGA TGATGGGCTTGACCTGGATGGTCCTATGTTCGAAGCTAGGAAGTTGGCTGATAATTTATCACTGAAAGGAACTTCCCTATTCCTCCTAGGAACGAAATGT GCGATGAAATTGACCGTGGGGAGGCTCCTGGCGGATATGTTCAGCTATGTTTTTATTGACAGTGATGATGTGGTAAATCAAGCTGCTGGTGGTGCCGCTG CTGCCAAAACTTTCAGAGAGAGTGATCAGGAGGGATTTCGTGAGGCTGAGAGTAGTGCTACTGGCTATGAAGGGAATCCTTATCTTGTGGTGGCTGATGC AGACAGAAGTTTTGAAGCAATTGTCAGCCATGGGGAGGCTGGTGATTTCTGCGGGAGATGGCGCTGTTCAAAGCTCAACCAACCTGTATGGACTGCAATT ACAACACTGGTTCTTCTGAGAGATGGGATCTCTCTATGGATAGACATTCCTTTATCCGTTGCAACCATCGGCAAGCCACCCGACAATCCAGAGTTTCTTG CTGCCTACGAAGAACTTAGAGGTGGATACAGTACAGCTGATGCAACAGTTTCCCTCCCACGAATAGCTGCTAAAGAGAACTACGAATCGTTCGACTTCGT CACACCTGAAGATATGGTGCTGGAGGCTGTGAGCGCGATAGGGAAGCTGACAAGGGTAAAGAAGATGATGGAAGAAGCAGCTACACCATTTTAG
AA sequence Show only first row Show all	>Lus10032000 pacid=23161088 polypeptide=Lus10032000 locus=Lus10032000.g ID=Lus10032000.BGIv1.0 annot-version=v1.0 MEVVSNPTTTITHFFFSYYSGGFQFPPLSNSLVRFPKASFTPTSPSVVSLRKPIPITTINRALTGDDDGLDLDGPMFEARKLADNLSLKGTSLFLLGTKC AMKLTVGRLLADMFSYVFIDSDDVVNQAAGGAAAAKTFRESDQEGFREAESSATGYEGNPYLVVADADRSFEAIVSHGEAGDFCGRWRCSKLNQPVWTAI TTLVLLRDGISLWIDIPLSVATIGKPPDNPEFLAAYEELRGGYSTADATVSLPRIAAKENYESFDFVTPEDMVLEAVSAIGKLTRVKKMMEEAATPF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Lus10032000 [exp]	0	1
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Lus10035171 [exp]	1.0	0.9701
AT1G01080			RNA-binding (RRM/RBD/RNP motif...		Lus10002676 [exp]	3.9	0.9199
AT1G01080			RNA-binding (RRM/RBD/RNP motif...		Lus10030194 [exp]	4.0	0.9437
AT4G24750			Rhodanese/Cell cycle control p...		Lus10019454 [exp]	4.9	0.9182
AT4G15510			Photosystem II reaction center...		Lus10000614 [exp]	8.5	0.9248
AT1G30520		AAE14	acyl-activating enzyme 14 (.1)		Lus10036027 [exp]	11.8	0.9152
AT4G30845			unknown protein		Lus10026098 [exp]	13.0	0.9079
AT1G64510			Translation elongation factor...		Lus10032419 [exp]	16.1	0.9210
AT5G11580			Regulator of chromosome conden...		Lus10038724 [exp]	17.9	0.8959
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10033026 [exp]	18.2	0.8872

Compare expression of checked genes

Lus10032000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.