Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33490 407 / 2e-134 hydroxyproline-rich glycoprotein family protein (.1) AT3G26910 347 / 2e-111 hydroxyproline-rich glycoprotein family protein (.1.2) AT5G41100 346 / 4e-111 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035172 [exp] 1035 / 0 AT2G33490 436 / 2e-145 hydroxyproline-rich glycoprotein family protein (.1) Lus10002580 [exp] 385 / 2e-125 AT2G33490 484 / 3e-164 hydroxyproline-rich glycoprotein family protein (.1) Lus10001808 [exp] 384 / 2e-123 AT2G33490 475 / 1e-158 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G063000 [exp] 665 / 0 AT2G33490 435 / 1e-144 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G324800 [exp] 640 / 0 AT2G33490 421 / 2e-139 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G061500 [exp] 467 / 3e-157 AT2G33490 478 / 8e-162 hydroxyproline-rich glycoprotein family protein (.1) Potri.003G166300 [exp] 428 / 3e-142 AT2G33490 493 / 1e-167 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0145 [flax] [poplar] Golgi-transport PF03114 [flax] [poplar] BAR BAR domain
Representative CDS sequence Show only first row Show all	>Lus10032001 pacid=23161116 polypeptide=Lus10032001 locus=Lus10032001.g ID=Lus10032001.BGIv1.0 annot-version=v1.0 ATGAAGTCCCCGTTACGGAAGTTCCGGGGATTTAAGCTCCACAAGAGCGATTCCAAAGGTAAGCGGGACTTCTTGCATCCCGCGCACTTGGATGAGCTCG CTGAAGCTGCTCAGGATATGCAGGACATGAGAAACTGCTATGATAGCTTACTTTCAGCTGCTGCTGCAACGGCAAACAGTGCTTATGAATTCTCGGAGTC ACTACGGGAAATGGGCACATGTTTGCTGGAGAAGACTGCATTGCACGATGATGAAGAAAGTGGAAGAATTCTATTAATGTTGGGGAAAGCACAATTTGAA CTTCAGAAGTTTGTTGATAGCTACCGGTCTCACATATTCCTGACAATCACGAATCCATCAGAGTCTCTTCTAAATGAACTTCGTACAGTTGAGGATATGA AAAGACAATGTGATGAGAAAAGGAATGTATATGAATACATCGCTGCTCAACAAAAAGACAAGGGAAGGTCAAAGAGTTCAAAAGGTGATTGTTTTACTCC AGAGCAATTACGAACTGCTCATGATGAATATAATGAAGAGGCAACACTGTGCATTTTCCGATTGAAGTCTTTGAAACAAGGGCAGTCCAGAAGCTTATTA ACTCAAGCAGCTCGTCATCATGCAGCTCAGTTAAATTTCTTTAGGAAAGGACTCAAGTCACTTGAGGTAGTTGATCCACAAGTAAGACATGTTACCGAAC AGCACCATATTGATTACCAGTTCAGTGGACTTGAAGATGATGGCAGGGGAGATGCAGAAGATGACGGTGAAACTATTGATGATACAAATGCAGAAGGGGA ACTAAGTTTTGACTATAGAATAAATAAGACACATAATGAGACTTCGACTTCAAGGAATTCAATGGAGGTAGATGAAGATTTGTCATTTCCGCGACATTCT AGAACAGAAAATGCTGAGTTGAACCTGGACAGGGATCAAGGGGATTTACATATATATAGATCTGGAAGTCACTCGGCTCCAATTTTTCCGGAAAGGAAGA TCGATCCAATCGAAAGAATACGACAAATGCAGAAGTCACCAAGGAAGAGTAATGCTTATGTGCTCCCCAGACCAACTGATACTAAGATTCCAGGCCCTCC CAGAACAAGTGCTTTAAATCCACCGACTAAGTCAACAGATTATGCCGGACGGGCCAATTTGTGGCATTCCTCCCCGTTGGAACAGAAGAGACATGAGAAG GATTCCGCTGAAGGTCATCTTTCGGACTTGAATGCCTTGAGACCGTGTCAAGCACAGAAAGAGAGCAACAGCAGTAACTCCTCGACTCAGTTGCCGCCCC CTCCATCAGATGGAATGTCACTTCCACAACCTGACTCATATAATGCATCTGATAGCAAAAAGAAAAGACTGTCTTTCTCTGGCCCAATAATTGGCAAGAA TTTGCCAACAAAGCAAGGGTACTCTGCCAGTGGTCCGATTCCTTCTACTGAACTGCCTCAACAGGTTTCTGGGTTGCTGTCTCGGATACCAGCTTATCAG CCTTCTGCATCTCCAAAAGTATCGCCGACTGCATCGCCTCCTCTTTCATCTCCCAGAATTAGTGAACTTCATGAACTTCCTAGGCCACCTGGAATGATAG CAGGGAAATCAGCAAAAGCTACATCATCATCCAGTGGCCACTCTGCCCCTTTAGTTAGAAGTAACGAGGCTTATGGAACAATCAGGAGTTCTGGTGGCAC AACTTTAGCTTCCCCTCTTCCGACACCTCCATCATTATCTGTATCTAGAAGTTTCTCAATACCTTCAAGCAGCCAGAGAGGCATGACTATACAAGGCAAG GCTGAAGATACCGATTCCCCACCGTTGACACCGATTTCACTTGCAAATCTTAGATCAGCAGCTGCGGTTCCCGAAGTTTTCTCCCCTCGCACTGGCCAAA TTAGAGGTAATGTATAG
AA sequence Show only first row Show all	>Lus10032001 pacid=23161116 polypeptide=Lus10032001 locus=Lus10032001.g ID=Lus10032001.BGIv1.0 annot-version=v1.0 MKSPLRKFRGFKLHKSDSKGKRDFLHPAHLDELAEAAQDMQDMRNCYDSLLSAAAATANSAYEFSESLREMGTCLLEKTALHDDEESGRILLMLGKAQFE LQKFVDSYRSHIFLTITNPSESLLNELRTVEDMKRQCDEKRNVYEYIAAQQKDKGRSKSSKGDCFTPEQLRTAHDEYNEEATLCIFRLKSLKQGQSRSLL TQAARHHAAQLNFFRKGLKSLEVVDPQVRHVTEQHHIDYQFSGLEDDGRGDAEDDGETIDDTNAEGELSFDYRINKTHNETSTSRNSMEVDEDLSFPRHS RTENAELNLDRDQGDLHIYRSGSHSAPIFPERKIDPIERIRQMQKSPRKSNAYVLPRPTDTKIPGPPRTSALNPPTKSTDYAGRANLWHSSPLEQKRHEK DSAEGHLSDLNALRPCQAQKESNSSNSSTQLPPPPSDGMSLPQPDSYNASDSKKKRLSFSGPIIGKNLPTKQGYSASGPIPSTELPQQVSGLLSRIPAYQ PSASPKVSPTASPPLSSPRISELHELPRPPGMIAGKSAKATSSSSGHSAPLVRSNEAYGTIRSSGGTTLASPLPTPPSLSVSRSFSIPSSSQRGMTIQGK AEDTDSPPLTPISLANLRSAAAVPEVFSPRTGQIRGNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33490			hydroxyproline-rich glycoprote...		Lus10032001 [exp]	0	1
AT2G33490			hydroxyproline-rich glycoprote...		Lus10035172 [exp]	2.4	0.8688
AT1G30755			Protein of unknown function (D...		Lus10017259 [exp]	2.4	0.8210
AT5G17680			disease resistance protein (TI...		Lus10011104 [exp]	8.5	0.7947
AT1G69840			SPFH/Band 7/PHB domain-contain...		Lus10037213 [exp]	14.5	0.7858
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031484 [exp]	15.0	0.7920
AT1G61140		EDA16	embryo sac development arrest ...		Lus10018465 [exp]	15.3	0.7286
AT1G77480			Eukaryotic aspartyl protease f...		Lus10025687 [exp]	18.3	0.7784
AT4G12720		ATNUDX7, GFG1, ...	GROWTH FACTOR GENE 1, Arabidop...		Lus10006365 [exp]	22.0	0.7744
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10005490 [exp]	26.5	0.7200
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10005630 [exp]	27.2	0.7136

Compare expression of checked genes

Lus10032001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.