Plant FIBer expression Database

Lus10032002 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10032002 pacid=23161273 polypeptide=Lus10032002 locus=Lus10032002.g ID=Lus10032002.BGIv1.0 annot-version=v1.0
ATGGGTTGCGGCGTTTCCAGGTTTGATCCCCCTGAAGGTACAGCGGCGGCTGCGGAAGGGCAACCGACGTCGAACGACGCGGATTCTCCTCCGACGTCGG
CGGATGCAGTAAAAAGCAATGCTAACTCCGTCGCCGTGGCGCCCTCGTCGGGCCGTAGACTACGAGGGTTGAGGAGGATCAGGAGATACCAACATCACCA
TCAGGTTGTGGACGTAGATGATGATGATCGAAGCATTAATGATGTGTCTAATAAAAATCCTGCCACCGGAAAGGATGGCGAGCCGCTGGTGGTGGTTGTG
AACGCCGGTGGAGAGAAGTCGACGTCTTTCAACGCCGGCAGCAATCGGTCTGGACATCGGGAAGATAGCATATTCGTTTCTGTTAGTTCCCCAAGTTTCA
GGGTTTATTGTCTCAACGACGTCGTCCTGCCTCCATTGGATGATCATGATTCCCCGTCTCATGATCATGATCTTGATGAATATTTGGGGGCAGATCGTAA
CGGGGAAGAGGGTGAAAAGGAGAACAAAGCACCAACAAGTGATGTATCAAATAAGATGAAGGGAGAGGAAGGAGGGAATTGCATAAAGAAGAAGAAGAAA
GGAGGAGGAGGAATGGTGATGAGGGGGAGAGGGACAAGGAGTGTGCTACAGAGCAGCAGGGGAGGAGGAGGAGGAATCTCAGCATCAGCCGGAGGAGGAA
GAGGAGGAGGAATCTCAGCATCAACCGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAATGAGACACATTCTTAATTACCCACATCGTTTGAGAAATCGTTC
TTCTAAACAATTATATTAA
AA sequence
>Lus10032002 pacid=23161273 polypeptide=Lus10032002 locus=Lus10032002.g ID=Lus10032002.BGIv1.0 annot-version=v1.0
MGCGVSRFDPPEGTAAAAEGQPTSNDADSPPTSADAVKSNANSVAVAPSSGRRLRGLRRIRRYQHHHQVVDVDDDDRSINDVSNKNPATGKDGEPLVVVV
NAGGEKSTSFNAGSNRSGHREDSIFVSVSSPSFRVYCLNDVVLPPLDDHDSPSHDHDLDEYLGADRNGEEGEKENKAPTSDVSNKMKGEEGGNCIKKKKK
GGGGMVMRGRGTRSVLQSSRGGGGGISASAGGGRGGGISASTGGGGRGGGGGMRHILNYPHRLRNRSSKQLY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10032002
[exp]
0 1
AT1G52540 Protein kinase superfamily pro... Lus10001323
[exp]
1.0 0.9734
AT1G47710 Serine protease inhibitor (SER... Lus10040926
[exp]
1.4 0.9301
Lus10001069
[exp]
3.0 0.8505
AT5G20260 Exostosin family protein (.1) Lus10027707
[exp]
6.3 0.7045
AT1G24190 SNL3, AtSin3 ARABIDOPSIS THALIANA SIN3 HOMO... Lus10042336
[exp]
10.6 0.7434
AT5G62440 Protein of unknown function (D... Lus10022837
[exp]
14.1 0.7346
AT1G04520 PDLP2 plasmodesmata-located protein ... Lus10003754
[exp]
16.7 0.7370
AT1G06770 DRIP1 DREB2A-interacting protein 1 (... Lus10042532
[exp]
17.3 0.7139
Lus10030066
[exp]
18.2 0.6297
AT1G20330 FRL1, CVP1, SMT... FRILL1, COTYLEDON VASCULAR PAT... Lus10004158
[exp]
18.5 0.7139

Lus10032002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.