Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27435 102 / 3e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035173 [exp] 126 / 1e-39 AT1G27435 107 / 3e-32 unknown protein Lus10012558 [exp] 108 / 2e-32 AT1G27435 106 / 5e-32 unknown protein Lus10041533 [exp] 108 / 2e-32 AT1G27435 104 / 4e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325000 [exp] 100 / 4e-29 AT1G27435 103 / 1e-30 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032003 pacid=23161054 polypeptide=Lus10032003 locus=Lus10032003.g ID=Lus10032003.BGIv1.0 annot-version=v1.0 ATGGCTGGAGTAGGAGGAGCGTTTTGGGCAACGAGAGTAATGGAGATAGTGAAGAAGCACGACTCTGGAGGACTCGTCTGGAAAAGAATCAAACTTACCC CTTCTCGTAAAGCCAACGCCAAGAAGCGCCTCCAACGTGTCTGGCAGAATGAAGCTGTCTTGAGGGCCTGTGCTGAAGAACCATCTTCAACAACATCAAC AAATGAGACTGGTGGCACTGGAGAAGTAGAAGATGGTCCCAACAACACCAGCAATTTGAATACATCCAGTTAA
AA sequence Show only first row Show all	>Lus10032003 pacid=23161054 polypeptide=Lus10032003 locus=Lus10032003.g ID=Lus10032003.BGIv1.0 annot-version=v1.0 MAGVGGAFWATRVMEIVKKHDSGGLVWKRIKLTPSRKANAKKRLQRVWQNEAVLRACAEEPSSTTSTNETGGTGEVEDGPNNTSNLNTSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27435			unknown protein		Lus10032003 [exp]	0	1
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10030401 [exp]	1.0	0.8945
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10008305 [exp]	3.5	0.8902
AT2G15270			unknown protein		Lus10002814 [exp]	6.7	0.8909
AT5G53800			unknown protein		Lus10014800 [exp]	8.0	0.8930
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Lus10011491 [exp]	12.1	0.8673
AT1G09630		ATRAB-A2A, ATRA...	ARABIDOPSIS RAB GTPASE A2A, RA...		Lus10041116 [exp]	15.0	0.8366
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Lus10010326 [exp]	17.3	0.8749
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Lus10041514 [exp]	17.5	0.8459
AT5G14440			Surfeit locus protein 2 (SURF2...		Lus10022288 [exp]	18.5	0.8692
AT4G16450			unknown protein		Lus10039057 [exp]	20.0	0.8809

Compare expression of checked genes

Lus10032003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.