Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15620 65 / 1e-13 Uncharacterised protein family (UPF0497) (.1) AT4G15630 56 / 4e-10 Uncharacterised protein family (UPF0497) (.1) AT5G15290 55 / 5e-10 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) AT2G27370 54 / 2e-09 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) AT4G03540 51 / 2e-08 Uncharacterised protein family (UPF0497) (.1) AT1G03700 49 / 5e-08 Uncharacterised protein family (UPF0497) (.1) AT1G17200 49 / 8e-08 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) AT4G25830 44 / 5e-06 Uncharacterised protein family (UPF0497) (.1) AT4G25040 44 / 5e-06 Uncharacterised protein family (UPF0497) (.1) AT3G14380 42 / 3e-05 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031998 [exp] 238 / 3e-81 AT4G15620 80 / 1e-18 Uncharacterised protein family (UPF0497) (.1) Lus10035168 [exp] 235 / 3e-80 AT4G15620 78 / 8e-18 Uncharacterised protein family (UPF0497) (.1) Lus10012562 [exp] 127 / 9e-38 AT4G15620 77 / 1e-17 Uncharacterised protein family (UPF0497) (.1) Lus10041528 [exp] 119 / 6e-35 AT4G15620 74 / 5e-17 Uncharacterised protein family (UPF0497) (.1) Lus10043192 [exp] 74 / 2e-17 AT4G25040 61 / 3e-12 Uncharacterised protein family (UPF0497) (.1) Lus10032548 [exp] 69 / 8e-15 AT1G03700 62 / 3e-14 Uncharacterised protein family (UPF0497) (.1) Lus10012809 [exp] 55 / 8e-10 AT4G15630 179 / 4e-57 Uncharacterised protein family (UPF0497) (.1) Lus10033007 [exp] 53 / 4e-09 AT5G15290 216 / 3e-72 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10033971 [exp] 52 / 8e-09 AT4G15630 162 / 1e-51 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G062100 [exp] 95 / 3e-25 AT4G25040 82 / 6e-20 Uncharacterised protein family (UPF0497) (.1) Potri.001G323700 [exp] 90 / 4e-23 AT4G15620 75 / 8e-17 Uncharacterised protein family (UPF0497) (.1) Potri.012G104300 [exp] 85 / 2e-21 AT4G25040 97 / 7e-26 Uncharacterised protein family (UPF0497) (.1) Potri.015G103600 [exp] 77 / 2e-18 AT4G25040 90 / 9e-23 Uncharacterised protein family (UPF0497) (.1) Potri.019G100300 [exp] 55 / 6e-10 AT1G03700 150 / 6e-47 Uncharacterised protein family (UPF0497) (.1) Potri.013G131700 [exp] 53 / 3e-09 AT1G03700 159 / 9e-50 Uncharacterised protein family (UPF0497) (.1) Potri.001G436400 [exp] 48 / 3e-07 AT1G17200 245 / 1e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.010G208300 [exp] 44 / 6e-06 AT5G54980 176 / 2e-56 Uncharacterised protein family (UPF0497) (.1) Potri.006G208800 [exp] 44 / 9e-06 AT5G06200 201 / 7e-66 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.011G052100 [exp] 43 / 1e-05 AT4G03540 100 / 2e-27 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10032005 pacid=23161242 polypeptide=Lus10032005 locus=Lus10032005.g ID=Lus10032005.BGIv1.0 annot-version=v1.0 ATGGATAGAGCATTGTTATTTAGGAAGTTTCTAGTAGATTCCAACAGTTACGCACAAATTCAAACGTTTCTGGTCGATGCGAATATAATCGTTTGCGCAT CCTCGGTGGTGTCTCTGATCTGTATCTGGGTGCTGTGGAAGAACATCTCTCCACCTCAGCTCCCATTTAGACTTTTCTACCTCCTACTCCATGACCTTGT GATGATGGGGTTAATGACGGCTGGGTGTGCAGCAGCATCAGCAGTAGGACTGGTGGGATACAATGGGATTGACAAGATTGGTTGGGTGGCAATCTGTGGC AGCGTTACCAAGTTCTGTCACAAAATGCTTGCTGCTGTTATCTTGTCGTATTTGTCTCTCGTCACTTACTTGGCTCTCACCTTTATCTCTGCCTTCAAAC TAGCTTCCATTTCTTCTCACTGA
AA sequence Show only first row Show all	>Lus10032005 pacid=23161242 polypeptide=Lus10032005 locus=Lus10032005.g ID=Lus10032005.BGIv1.0 annot-version=v1.0 MDRALLFRKFLVDSNSYAQIQTFLVDANIIVCASSVVSLICIWVLWKNISPPQLPFRLFYLLLHDLVMMGLMTAGCAAASAVGLVGYNGIDKIGWVAICG SVTKFCHKMLAAVILSYLSLVTYLALTFISAFKLASISSH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15620			Uncharacterised protein family...		Lus10032005 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10031033 [exp]	5.5	0.7497
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10034957 [exp]	7.7	0.7497
AT4G37840		HKL3	hexokinase-like 3 (.1)		Lus10011584 [exp]	8.0	0.7377
AT1G70780			unknown protein		Lus10039287 [exp]	9.5	0.7497
					Lus10027606 [exp]	12.0	0.7351
AT5G24130			unknown protein		Lus10001061 [exp]	12.3	0.7159
AT2G14440			Leucine-rich repeat protein ki...		Lus10005049 [exp]	14.5	0.7245
					Lus10042276 [exp]	16.6	0.7257
AT4G39830			Cupredoxin superfamily protein...		Lus10000871 [exp]	19.6	0.6394
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10012859 [exp]	19.6	0.6732

Compare expression of checked genes

Lus10032005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.