Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02040 485 / 2e-172 AtGDPD1, SRG3 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) AT5G41080 459 / 5e-162 AtGDPD2 glycerophosphodiester phosphodiesterase 2, PLC-like phosphodiesterases superfamily protein (.1.2) AT5G43300 373 / 4e-128 AtGDPD3 glycerophosphodiester phosphodiesterase 3, PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035175 [exp] 730 / 0 AT3G02040 494 / 7e-176 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Lus10012556 [exp] 610 / 0 AT3G02040 499 / 5e-178 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Lus10002582 [exp] 441 / 9e-155 AT5G43300 440 / 2e-154 glycerophosphodiester phosphodiesterase 3, PLC-like phosphodiesterases superfamily protein (.1) Lus10011337 [exp] 408 / 1e-142 AT5G43300 423 / 9e-149 glycerophosphodiester phosphodiesterase 3, PLC-like phosphodiesterases superfamily protein (.1) Lus10041535 [exp] 230 / 4e-75 AT3G02040 205 / 4e-66 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G063500 [exp] 551 / 0 AT3G02040 505 / 1e-180 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Potri.001G325200 [exp] 542 / 0 AT3G02040 509 / 0.0 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Potri.001G061100 [exp] 455 / 4e-160 AT3G02040 442 / 1e-155 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [flax] [poplar] PLC PF03009 [flax] [poplar] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Lus10032006 pacid=23161211 polypeptide=Lus10032006 locus=Lus10032006.g ID=Lus10032006.BGIv1.0 annot-version=v1.0 ATGGCGTTGAAGGCCGTACATGTCGCCGACGTCCCAACCCTGGATCTCGTCCCTGACAATGTCGCCGTTGCTCCTTCTTTCTCTCTCTTCTCCTCCGGGA TGGAGATGAAGAAAAACAGCTGTAAGGTCCCCAAATTTCTGGTGGTTGGACACAGAGGCCACGGGATGAACAATTTCCAGTCTCTTGATCCCAGGATGAA AGCCATTAAAGAGAACACTCTTCTTTCTTTCAATTCCGCCGCTCGTTTCCCTCTCGACTTTGTTGAATTCGACGTTCAGGTTACCAAGGATGGCTGCCCC ATAATCTTCCACGATAACTTCATCCTTTCCGAGGATAACGGGACGATCTTCGAGAAAAGAGCGACAGAGCTCTCCCTATCGGAGTTCCTCGCCTACGGCC CGCAGAAGTCATCCTCCTGCCCATCAGGAAAATCCCTCTTACGCAAAACCAAAGACGGTCAAATCGTGAAATGGGACGTGGAAAAAGACGAAGCCTTTTG CACACTCCAGGACGCTTTCCAACAAGTGTCAAACCCTTCATCGCTCGGATTCAACATCGAACTGAAATTCGACGATCACATAGTCTACAGCCACGACCAC CTCACCAGAGCTCTGGAATCGATCCTCAAGATAGTGTTTCAATTCGCGAAGGACCGTCCGGTGATCTTCTCGTCGTTCCAGCCCGACGCAGCCCTGCTGG TGAAGAAGATGCAGAGTGTTTACCCTGTTTATTTCCTGACGGATGCCGGGAGCCAGACGTTTTACGATTCAAGGAGGAATTCGCTGGAGGATGCGATTGG GGTTTGTTTGGAAGGTGGGCTTGAAGGGATTGTTTCTGAGGTTAGAGGGGTGTTCAGGAATCCTGCTGCGGTTGGGAAGATTAAGGAGGCTAAGCTGTCA TTGCTGACGTATGGGAAGTTGAATAATGTGGCGGAAGCGGTGTATATGCAGCATTTGATGGGGATTGATGGGGTGATTGTGGATCTTGTTGAGGAGATCA CTGAGGCGGTTGGGGAGATGATTAAGCCGCCGTCGAAGAGTGGAGAAGGAGAGTTGTTGTTGGAGGAGGAGGTAAAGGAAAGGCCACAGTTTTCAAACAA GGAGATATCGTTTCTGTTGAAGCTGATTCCAGAGTTGATACAGCAGCACTGA
AA sequence Show only first row Show all	>Lus10032006 pacid=23161211 polypeptide=Lus10032006 locus=Lus10032006.g ID=Lus10032006.BGIv1.0 annot-version=v1.0 MALKAVHVADVPTLDLVPDNVAVAPSFSLFSSGMEMKKNSCKVPKFLVVGHRGHGMNNFQSLDPRMKAIKENTLLSFNSAARFPLDFVEFDVQVTKDGCP IIFHDNFILSEDNGTIFEKRATELSLSEFLAYGPQKSSSCPSGKSLLRKTKDGQIVKWDVEKDEAFCTLQDAFQQVSNPSSLGFNIELKFDDHIVYSHDH LTRALESILKIVFQFAKDRPVIFSSFQPDAALLVKKMQSVYPVYFLTDAGSQTFYDSRRNSLEDAIGVCLEGGLEGIVSEVRGVFRNPAAVGKIKEAKLS LLTYGKLNNVAEAVYMQHLMGIDGVIVDLVEEITEAVGEMIKPPSKSGEGELLLEEEVKERPQFSNKEISFLLKLIPELIQQH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10032006 [exp]	0	1
AT5G38710			Methylenetetrahydrofolate redu...		Lus10003051 [exp]	2.8	0.9674
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	3.3	0.9758
AT3G14260			Protein of unknown function (D...		Lus10001484 [exp]	3.9	0.9709
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10028311 [exp]	4.9	0.9689
					Lus10017917 [exp]	5.2	0.9733
AT5G47720			Thiolase family protein (.1.2....		Lus10039109 [exp]	6.0	0.9732
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	7.5	0.9737
AT5G08240			unknown protein		Lus10040984 [exp]	7.5	0.9441
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10005594 [exp]	10.3	0.9442
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10003665 [exp]	11.6	0.9667

Compare expression of checked genes

Lus10032006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.