Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26932 306 / 7e-102 DRB3 dsRNA-binding protein 3 (.1.2) AT5G41070 305 / 1e-100 DRB5 dsRNA-binding protein 5 (.1) AT2G28380 282 / 3e-91 DRB2 dsRNA-binding protein 2 (.1) AT3G62800 132 / 4e-35 DRB4 double-stranded-RNA-binding protein 4 (.1.2.3) AT1G09700 100 / 8e-23 DRB1, HYL1 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035176 [exp] 630 / 0 AT5G41070 321 / 4e-107 dsRNA-binding protein 5 (.1) Lus10000721 [exp] 265 / 3e-84 AT2G28380 442 / 3e-153 dsRNA-binding protein 2 (.1) Lus10021471 [exp] 258 / 1e-81 AT2G28380 435 / 2e-150 dsRNA-binding protein 2 (.1) Lus10041311 [exp] 117 / 2e-29 AT2G28380 191 / 1e-57 dsRNA-binding protein 2 (.1) Lus10003362 [exp] 113 / 2e-29 AT2G28380 116 / 1e-30 dsRNA-binding protein 2 (.1) Lus10008422 [exp] 115 / 2e-27 AT5G17920 1389 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10002619 [exp] 97 / 8e-22 AT3G62800 162 / 6e-46 double-stranded-RNA-binding protein 4 (.1.2.3) Lus10008862 [exp] 96 / 7e-21 AT1G09700 237 / 1e-70 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) Lus10023248 [exp] 95 / 1e-20 AT1G09700 232 / 1e-68 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G063700 [exp] 351 / 2e-117 AT5G41070 322 / 2e-106 dsRNA-binding protein 5 (.1) Potri.001G325300 [exp] 348 / 1e-116 AT3G26932 313 / 2e-103 dsRNA-binding protein 3 (.1.2) Potri.013G032400 [exp] 295 / 9e-95 AT5G41070 266 / 9e-84 dsRNA-binding protein 5 (.1) Potri.005G045700 [exp] 286 / 2e-91 AT3G26932 258 / 6e-81 dsRNA-binding protein 3 (.1.2) Potri.013G061500 [exp] 132 / 7e-34 AT3G62800 162 / 3e-45 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G038226 [exp] 126 / 3e-33 AT3G62800 146 / 1e-41 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G037900 [exp] 130 / 2e-32 AT3G62800 151 / 8e-40 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G038184 [exp] 124 / 4e-32 AT3G62800 145 / 5e-41 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.009G152900 [exp] 114 / 1e-27 AT3G26932 118 / 4e-29 dsRNA-binding protein 3 (.1.2) Potri.002G111400 [exp] 109 / 1e-26 AT1G09700 214 / 7e-66 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Lus10032007 pacid=23161301 polypeptide=Lus10032007 locus=Lus10032007.g ID=Lus10032007.BGIv1.0 annot-version=v1.0 ATGTTCAAGAACCAGTTACAGGAACTAGCACAGAGAAGCTGCTTCAATCTTCCATCATATGTATGTATAAGAGAAGGTCCTGATCATGCACCAAGGTTCA AGGCTTCAGTGAACTTCAATGGAGAGGTTTTTGAGAGTCCAACTTACAACCCAACGTTGAGACAGGCTGAACATTCAGCTGCTGAAGTTGCTCTCAATGT TCTTTCCTCTAGAGGTCCTTCCAGGTCCTTGACGGCAAGAGTCCTGGATGAGACTGGAATATACAAGAACCTGCTTCAGGAAACTGCTCATAGGGCAGGG CTTAATTTACCAGTCTACACAACTGTGAGATCAGGGCCAGGCCATGTCCCAATTTTCACATGTACAGTTGAGCTTGCTGGGATGAAATTCACTGGAGATT CAGCTAAGACCAAGAAGCAAGCTGAGAAGAATGCTGCCATTGCAGCTTGGTCTGCACTCAAGAGAACTCCAAGCTTGGATTCATTGACAAACAAAGAACC TGGAGGAGGATGGAGTGGTAGTGAGAACAAGGAGGAGCAAGAGCAAGCAATTGTGGCAAACGTGCTTTCCAACTTGAGAACTAAAGAAGACTCCTCCTCA GCAAAACAGGTTGCTGTTAGAAAGAGGGATTACAGCAATCCTTCTATGGCAAGGAGAAGAACGGTAAAGGGACCATCTTTACCATCATCATCATCAGCTT CTTCTTCTGCTTCAAATGCGCAGCAGCAATGCAGGTTTCTGGATCTGATGTTGGAATCAGCCATGAAAGCTACTAGGGATGAGAAAGGAAAGAACTTGTT GTGTCCATCATTCATGTCTCTCCTCCCTCCACCGCCTCCAAGAACCACATCAAAGATTCTGCCACCAATTTCAGCAGCAGAAGAAGAAGAGAGTCCTCAT AGGCTTGCATCACTGTTTGATAAAGCTGATAAACAGGACCATCAGGCTACTACCACCAAAGGGTTTGCTGAGAGAAGAGTTTTGGGATCACTACAATCAG TTGTGCACATGGGGAGACCAATTTACACACCAGGCGCCGGAGGGTTTTTCAGCCATAATAATCCTTCAAGGATGATGGCTCCGGCTGTTCATATTAGGTC AGTGATTCCCGTCTGTGCATCCCCACCACCGGCGGCAATACCTCAACCGCCTCCTAAAGTCCCCGACAGAGAGACGGCGGAGTCGTCCAAGCAGCAGCTG AGTCAACCGAGTCCATCCGAGTTCAACAAGAAGCTACAGTTGTAA
AA sequence Show only first row Show all	>Lus10032007 pacid=23161301 polypeptide=Lus10032007 locus=Lus10032007.g ID=Lus10032007.BGIv1.0 annot-version=v1.0 MFKNQLQELAQRSCFNLPSYVCIREGPDHAPRFKASVNFNGEVFESPTYNPTLRQAEHSAAEVALNVLSSRGPSRSLTARVLDETGIYKNLLQETAHRAG LNLPVYTTVRSGPGHVPIFTCTVELAGMKFTGDSAKTKKQAEKNAAIAAWSALKRTPSLDSLTNKEPGGGWSGSENKEEQEQAIVANVLSNLRTKEDSSS AKQVAVRKRDYSNPSMARRRTVKGPSLPSSSSASSSASNAQQQCRFLDLMLESAMKATRDEKGKNLLCPSFMSLLPPPPPRTTSKILPPISAAEEEESPH RLASLFDKADKQDHQATTTKGFAERRVLGSLQSVVHMGRPIYTPGAGGFFSHNNPSRMMAPAVHIRSVIPVCASPPPAAIPQPPPKVPDRETAESSKQQL SQPSPSEFNKKLQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10032007 [exp]	0	1
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10018520 [exp]	2.8	0.9540
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10035176 [exp]	3.2	0.9447
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Lus10009790 [exp]	5.7	0.9359
AT5G45650			subtilase family protein (.1)		Lus10007083 [exp]	6.5	0.9269
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Lus10006765 [exp]	6.9	0.9270
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10007650 [exp]	7.5	0.9263
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10041595 [exp]	8.1	0.8511
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Lus10030105 [exp]	8.5	0.9178
AT3G05470			Actin-binding FH2 (formin homo...		Lus10004505 [exp]	9.6	0.9291
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10036496 [exp]	9.7	0.9285

Compare expression of checked genes

Lus10032007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.