Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26935 655 / 0 DHHC-type zinc finger family protein (.1) AT5G41060 587 / 0 DHHC-type zinc finger family protein (.1.2) AT3G48760 469 / 2e-163 DHHC-type zinc finger family protein (.1) AT4G24630 414 / 1e-142 DHHC-type zinc finger family protein (.1) AT5G50020 399 / 2e-136 DHHC-type zinc finger family protein (.1.2) AT3G56930 370 / 7e-125 DHHC-type zinc finger family protein (.1.2) AT5G05070 347 / 1e-116 DHHC-type zinc finger family protein (.1) AT2G40990 312 / 6e-103 DHHC-type zinc finger family protein (.1) AT3G56920 303 / 2e-100 DHHC-type zinc finger family protein (.1) AT3G04970 90 / 2e-19 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035177 [exp] 815 / 0 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 451 / 1e-156 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 450 / 5e-156 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10028737 [exp] 419 / 3e-144 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 412 / 6e-141 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10033527 [exp] 370 / 2e-126 AT4G24630 415 / 1e-144 DHHC-type zinc finger family protein (.1) Lus10020844 [exp] 367 / 7e-125 AT5G50020 405 / 3e-140 DHHC-type zinc finger family protein (.1.2) Lus10012096 [exp] 355 / 4e-119 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10035395 [exp] 338 / 1e-109 AT5G05070 463 / 1e-158 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325400 [exp] 699 / 0 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 682 / 0 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 536 / 0 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 510 / 8e-180 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 430 / 8e-149 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 415 / 8e-143 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.002G065500 [exp] 414 / 2e-142 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 409 / 1e-140 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.007G077000 [exp] 370 / 1e-126 AT4G24630 446 / 6e-157 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 365 / 2e-122 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10032009 pacid=23161278 polypeptide=Lus10032009 locus=Lus10032009.g ID=Lus10032009.BGIv1.0 annot-version=v1.0 ATGTATGTAGTGCCGCCACCTCAGAGATCCGATCCAGGATCCGGTCAGACTGATTTGCTAGTTTACCAGTCATGGAAAGGCAGCAATATATTTTTCCTGG GTGGGAGGTTCATATTCGGTCCAGATGTGAGATCACTTGCGCTTACTATATTCCTGATCGTTGCGCCAGTTGCAGTTTTCTGCATTTTTGTTGCTCGAAA ACTAATGGATGACTTCCCAAACGACTGGGGCATATCAATAACAGTTGCTGCTGTTGTATTCACCATTTATGATTTAGGTCTGCTGCTGCTGACTTCTGGG AGAGATCCTGGCATAATTCCTCGCAATGCACATCCTCCAGAACCTGAAGGATTTGATGGAAGTGCAGATGTCGGGTCAGGCCAAACTCCACAATTACGTC TGCCTCGGATCAAGGAGGTGGAGGTTAATGGTATGACTGTGAGAGTCAAGTACTGTGACACATGCATGCTTTACCGGCCTCCTCGTTGCTCACATTGTTC AATATGCAATAACTGCGTGGAGAGATTTGATCATCACTGCCCTTGGGTGGGTCAATGCATCGGTCTGAGAAATTACAGGTTCTTCTTCATGTTTGTCTTT TCAACGACCCTGTTATGTATATATGTCTTTGCATTTAGCTGGGTCTACATTAGGAGGATCATGTCCTCAGAGGACATCACGATTTGGAAAGCTATGATCA AGACCCCTGCCTCCATTGTTCTTATAATCTATACGTTCATATCAATGTGGTTCGTTGGTGGCCTTACAGCTTTCCACTTATATCTAATTAGCACCAATCA GACTACTTATGAGAATTTCAGATACCGATACGATAACCGCGCAAATCCTTACTACAAAGGAGTGGTCGACAACTTCAAGGAGATATTCTGCTCGAGCATT CCACCGTCCAAGAACGACTTCAGGGCCATGGTGCCTAGAGAACCTGCGCTGCCAACTAGATCAGTTGGAGGCGGGGGTTTCATGAGTCCAAACATGGGGA AAGCAGTGGAGGACATTGAAATGGGAAGGAAAACAGTGTGGAGTGACCCGGGGGAAGGCCAGCTCTCCTCCGGAAATGAACGAACAACAGTGAAAGAAGG CGAATTGAGCGGACTGTCCCCCGATATTCGAACAGCAGCGGCAGAGGAAGCAGGGGAACGCAGCGGTGGAGTGCATCCAAGAAGATCCAGCTGGGGAAGG AAAAGCGGGAGCTGGGAAATGTCGCCGGAAGTTCTGGCTTTAGCGGCAAGAGTAGGTGAATCCAATCGCATGGGTGGTAGCAGTAGCAGTGGCGGTTTGA CGACTGAAAATCGGCTAGTGTAA
AA sequence Show only first row Show all	>Lus10032009 pacid=23161278 polypeptide=Lus10032009 locus=Lus10032009.g ID=Lus10032009.BGIv1.0 annot-version=v1.0 MYVVPPPQRSDPGSGQTDLLVYQSWKGSNIFFLGGRFIFGPDVRSLALTIFLIVAPVAVFCIFVARKLMDDFPNDWGISITVAAVVFTIYDLGLLLLTSG RDPGIIPRNAHPPEPEGFDGSADVGSGQTPQLRLPRIKEVEVNGMTVRVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRFFFMFVF STTLLCIYVFAFSWVYIRRIMSSEDITIWKAMIKTPASIVLIIYTFISMWFVGGLTAFHLYLISTNQTTYENFRYRYDNRANPYYKGVVDNFKEIFCSSI PPSKNDFRAMVPREPALPTRSVGGGGFMSPNMGKAVEDIEMGRKTVWSDPGEGQLSSGNERTTVKEGELSGLSPDIRTAAAEEAGERSGGVHPRRSSWGR KSGSWEMSPEVLALAARVGESNRMGGSSSSGGLTTENRLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26935			DHHC-type zinc finger family p...		Lus10032009 [exp]	0	1
AT3G26935			DHHC-type zinc finger family p...		Lus10035177 [exp]	1.0	0.9015
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10001665 [exp]	1.4	0.8747
AT4G28760			Protein of unknown function (D...		Lus10022842 [exp]	2.8	0.8075
AT5G25170			PPPDE putative thiol peptidase...		Lus10005341 [exp]	3.7	0.7782
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Lus10017138 [exp]	7.3	0.8111
AT1G65295			unknown protein		Lus10026997 [exp]	8.0	0.7777
AT1G69690	TCP	AtTCP15, TCP15	TEOSINTE BRANCHED1/CYCLOIDEA/P...		Lus10037190 [exp]	9.4	0.7739
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10020413 [exp]	12.2	0.8032
AT5G67070		RALFL34	ralf-like 34 (.1)		Lus10003931 [exp]	13.9	0.7601
AT3G18050			unknown protein		Lus10027253 [exp]	14.8	0.7747

Compare expression of checked genes

Lus10032009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.