Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13160 393 / 6e-134 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G02800 382 / 1e-130 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT1G07870 380 / 2e-129 Protein kinase superfamily protein (.1.2) AT5G18610 377 / 9e-127 Protein kinase superfamily protein (.1.2) AT1G20650 370 / 5e-126 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT3G24790 367 / 4e-125 Protein kinase superfamily protein (.1) AT2G28590 367 / 2e-124 Protein kinase superfamily protein (.1) AT3G26940 363 / 9e-123 CDG1 CONSTITUTIVE DIFFERENTIAL GROWTH 1, Protein kinase superfamily protein (.1) AT3G20530 361 / 2e-122 Protein kinase superfamily protein (.1) AT1G76370 357 / 5e-121 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035178 [exp] 802 / 0 AT5G13160 393 / 6e-134 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10040350 [exp] 382 / 2e-130 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 382 / 3e-130 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 384 / 4e-130 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10041426 [exp] 381 / 4e-130 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 384 / 2e-129 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 384 / 2e-129 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 371 / 4e-126 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019897 [exp] 369 / 1e-125 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G067900 [exp] 440 / 4e-153 AT5G13160 434 / 3e-150 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 387 / 8e-131 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G215100 [exp] 379 / 1e-129 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G060800 [exp] 380 / 6e-129 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.005G252000 [exp] 377 / 1e-128 AT1G20650 531 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 379 / 2e-128 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.008G046500 [exp] 376 / 2e-128 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G205700 [exp] 379 / 1e-127 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.009G026500 [exp] 371 / 3e-126 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G234100 [exp] 371 / 5e-126 AT1G07870 590 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10032010 pacid=23161101 polypeptide=Lus10032010 locus=Lus10032010.g ID=Lus10032010.BGIv1.0 annot-version=v1.0 ATGGGATTTTATCCTCCTTGTCACGCTCTCATCAAGATTTTCAGGAAAAAATTCAGAATCATGGCCAAATCCAAGATCGAAGATGATCCTCGTGGTACTG GTAACACAGATCAGCAACCCTCCCCTGCTCCAGGACTTGGCCAAGGACTTATAGCAGGCCTTAACATGGCTCCAACGTTCATTTACCAAGAGCTCGAAGC CGCCACGAATGGGTTCGCCCCCGATGCTTATCTCGGAAGAGGTGGTTTCGGAGCGGTCTACAAGGGAAAAATCAAGAGAATAGGCCAGTTAGTGGCAGTG AAACAGCTGGATACATCTGGGTTTCAAGGGGAAAAGGAGTTCATTGTGGAGGTCCTGATGCTTTCTCTGCTGCACCATCCTAACCTCGTCAAGCTGATTG GTTACTGTGCCGAAGGGACTCAACGTCTTCTCGTCTATGAATACATGCCTTTGGGTTCTTTAGAAGATCGTCTCTTTGATCTGTCAAATGGGATACAACC TATGAACTGGAAAACAAGGATAAAGATAGCAGCGGGTACAGCAAAAGGGTTAGAATGCTTGCACTCTGCAACTCCTCCAGTTATATATAGAGACCTCAAA GCTTCCAACATATTGTTAGACAAAGATTACCAGCCGAAGCTGTCGGATTTCGGGTTGGCCAAATTCGGTCCTGTCGGGGATAGGTCGCATGTTTCGACTA GGGTCATGGGTACTTACGGGTATTGTGCACCTGAGTATGCTAACACGGGTAGACTCACCATAAAGACGGACATTTACAGTTATGGGGTGCTGTTGTTGGA GCTTATTACTGGCCGTAGAGCAATTGATCATGTGGATAATCGTTCAAGGAACCTTACTCAATGGGCTCTTCCCCTGATGAAAGACAAAGGCAACTGGGTG CAGCTAGCGGATCCACTGATGAAAGGCCACTACTCCACTTCCGTCTACGACAAGGCAATGGAGGTTGTATTGAGATGTCTATCCGAGAAACCTAGCTTCC GCCCCACGTCAACCGAGTTGGTTGGAGCAATGGACTATCTGCTGGCTCGATCCACCCATTCCAAGGATGCCAAGAAGGCTGCTGGAGCTGCTGCTGCTGC TAGCGCGGGATTGGCATGGCTCGACACTACTACTAATAACAACGATAAGCCTCCTCGTAGCGATCAAAACGAAGCAAAAGCAGCCGCGAAAGCGAACAAA GATCTGAGCCGGGAAGTTGAAGTTGAAGAAGCCAAGCTGTGGGGCAGAATTAGTAGGGATAATAACAATAAGTCGCCCAAGCATGAAGCAAGAACTGGTT CAGAAGGCACCAAGTAA
AA sequence Show only first row Show all	>Lus10032010 pacid=23161101 polypeptide=Lus10032010 locus=Lus10032010.g ID=Lus10032010.BGIv1.0 annot-version=v1.0 MGFYPPCHALIKIFRKKFRIMAKSKIEDDPRGTGNTDQQPSPAPGLGQGLIAGLNMAPTFIYQELEAATNGFAPDAYLGRGGFGAVYKGKIKRIGQLVAV KQLDTSGFQGEKEFIVEVLMLSLLHHPNLVKLIGYCAEGTQRLLVYEYMPLGSLEDRLFDLSNGIQPMNWKTRIKIAAGTAKGLECLHSATPPVIYRDLK ASNILLDKDYQPKLSDFGLAKFGPVGDRSHVSTRVMGTYGYCAPEYANTGRLTIKTDIYSYGVLLLELITGRRAIDHVDNRSRNLTQWALPLMKDKGNWV QLADPLMKGHYSTSVYDKAMEVVLRCLSEKPSFRPTSTELVGAMDYLLARSTHSKDAKKAAGAAAAASAGLAWLDTTTNNNDKPPRSDQNEAKAAAKANK DLSREVEVEEAKLWGRISRDNNNKSPKHEARTGSEGTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10032010 [exp]	0	1
AT4G27570			UDP-Glycosyltransferase superf...		Lus10039236 [exp]	1.0	0.9691
AT5G27230			Frigida-like protein (.1)		Lus10006522 [exp]	3.5	0.9084
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Lus10030134 [exp]	3.5	0.9359
					Lus10042590 [exp]	4.9	0.8969
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10004652 [exp]	5.3	0.9453
AT3G29760			Haloacid dehalogenase-like hyd...		Lus10027135 [exp]	9.8	0.9164
AT3G05330		ATN ,ATTAN	A. THALIANA TAN1, TANGLED, cyc...		Lus10002423 [exp]	10.0	0.8035
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10026165 [exp]	11.1	0.9232
					Lus10018837 [exp]	12.4	0.9213
AT3G55500		ATHEXPALPHA1.7,...	EXPANSIN 16, expansin A16 (.1)		Lus10014406 [exp]	12.5	0.9202

Compare expression of checked genes

Lus10032010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.