Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26950 549 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035181 [exp] 679 / 0 AT3G26950 656 / 0.0 unknown protein Lus10032012 [exp] 561 / 0 AT3G26950 512 / 3e-178 unknown protein Lus10035179 [exp] 544 / 0 AT3G26950 304 / 2e-98 unknown protein Lus10035180 [exp] 218 / 4e-69 AT3G26950 96 / 6e-24 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325500 [exp] 598 / 0 AT3G26950 647 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032011 pacid=23161115 polypeptide=Lus10032011 locus=Lus10032011.g ID=Lus10032011.BGIv1.0 annot-version=v1.0 ATGAAGCAGCAGCAACATCACGACAAGCAGGGATTCCGAAGAAGAATGCCGTGCTGCTTGCAACTGCGCACGAAGTTCCTGGTCGGGATCGTACTCTTAA CCACCTGCACCGGCTTGTTTCTACAGTACACATTCAGATGTGTGGCTACGACAACATTCGGATGGGAGGAAGAGAAGAAGAAGGAGAAGAGATCATGCGG TACAGTTGAAGAAATGGGTGAGAGGTTTAAGGATGGGCCCTGGAAGGAAAGCCTCAGAGTTAGGGAAATCATCCGACGCCACTTTCTCATCAATGGTGCA TCAAGAGTGAGGGGTCTCCCTGCAGAGGAATTCTGCAGACATGGATTCGTACTGGGGAGATCAACAGAGGGAGGTCTCGGAAACGAAATGTACAAGATCT TGAACGCCGCAGCCTTGACAATACTTCTCAACCGATCCTTGATCATCGTTCAAATCCAGGATAAGTACCCATTTGGAGACTACATATCCTATTCCAGGCA AGCCTTCAACCTTAGTGAAGTCAAGCAACTATGGAGGCAGAACGGCTGTCTTAAGAAATACGGAAGACATTTGGTTCTCAGGAGTGACAACTTTCTGAAG CCCACTAAGACCAATGTCTTGTGCAGCAATTGGAGGATCTGGGAGCAACCAATCATACGGTTTGAAAGTACAACCGATGCAATGGGAAGTCAGTTTTTCC TGAAGAACATACACCCTGAGATGAGAGATGCCGCTTCTGATTTATTTGGACATCCAGAAGAGCTTCAATCTCGGCCTAATGTATTCGGCGAGCTGATGAA CTTTCTTGTGTCTCCATCGGAAGAAGTTCAGGAGGCGGTTGATATGGTGCTTGATGGCGGCCCTGATCCTGACATTTCGTTGCACATGCGTATGATGAAC AACAGGCCGGCGGGAGCAGTGAAGCCAACACTAAACTGTGTGAAAAAAGCCATGCAAATTTTACAACCTAAGCAGCAGAAGAGACCCAGAGTGGTTTTGG TGTCGGATACACCATCTTTTATGCAAATCCTTGTTCCCGAGATAAGTCGATTCGCAGAGGTTCTTCAATTCGACTATAACAAGTTTGGAAGAAACATCCC TCGTGACGGTAAACCGGTGCACACTATGGACTCAAAAGCCAAAGATTGGGGTCCTGCACCAAGATGGGTTGCATTCGTGGATTTCTTCCTAGCAGCACGA GCCAAGCACGCCGTCATATCAGGGGCGAACAGCCGAGTCGGAACTACGTATGCTCAGCTGATTGCAGCACTAGCAGCAGCCAACCAACTCGGTGTGAACA AAACGGATCCAAAGTTCTCATTCATGAGCAGTTTCCAGAACAATGTGTTGAGGAAAGGGTTGAGTGTGCAGAGCGGGTGGGGCCATGTATGGAGCAGATT TGCGGGTCCTTTGAGCTGTGAAAACCAGTCGGATCAATGTGCTTTCACTCCTCTTTCTGCCCCTGCTTGGTGGGACGGTCCCTGGCAATCCCCTGTACAA TCGGACATCAAGAGACTGTCGATGTACGGCGTACGCCTCTCTGCAGAAGGAACAGTCGATGAAGATGGACTCGAGTCGTATTGTGCTTCGAGGAATGCCA CCGTCGTAACGACGAGGCTTATATAG
AA sequence Show only first row Show all	>Lus10032011 pacid=23161115 polypeptide=Lus10032011 locus=Lus10032011.g ID=Lus10032011.BGIv1.0 annot-version=v1.0 MKQQQHHDKQGFRRRMPCCLQLRTKFLVGIVLLTTCTGLFLQYTFRCVATTTFGWEEEKKKEKRSCGTVEEMGERFKDGPWKESLRVREIIRRHFLINGA SRVRGLPAEEFCRHGFVLGRSTEGGLGNEMYKILNAAALTILLNRSLIIVQIQDKYPFGDYISYSRQAFNLSEVKQLWRQNGCLKKYGRHLVLRSDNFLK PTKTNVLCSNWRIWEQPIIRFESTTDAMGSQFFLKNIHPEMRDAASDLFGHPEELQSRPNVFGELMNFLVSPSEEVQEAVDMVLDGGPDPDISLHMRMMN NRPAGAVKPTLNCVKKAMQILQPKQQKRPRVVLVSDTPSFMQILVPEISRFAEVLQFDYNKFGRNIPRDGKPVHTMDSKAKDWGPAPRWVAFVDFFLAAR AKHAVISGANSRVGTTYAQLIAALAAANQLGVNKTDPKFSFMSSFQNNVLRKGLSVQSGWGHVWSRFAGPLSCENQSDQCAFTPLSAPAWWDGPWQSPVQ SDIKRLSMYGVRLSAEGTVDEDGLESYCASRNATVVTTRLI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26950			unknown protein		Lus10032011 [exp]	0	1
AT5G55980			serine-rich protein-related (....		Lus10008880 [exp]	1.7	0.8638
AT4G29250			HXXXD-type acyl-transferase fa...		Lus10028335 [exp]	6.7	0.8648
					Lus10025095 [exp]	10.3	0.8641
AT3G29410		AtTPS25	Terpenoid cyclases/Protein pre...		Lus10038330 [exp]	13.9	0.8621
AT1G24735			S-adenosyl-L-methionine-depend...		Lus10021804 [exp]	18.7	0.8433
AT5G02910			F-box/RNI-like superfamily pro...		Lus10002819 [exp]	20.1	0.7082
					Lus10021782 [exp]	20.9	0.8432
AT3G19540			Protein of unknown function (D...		Lus10028040 [exp]	22.6	0.8432
					Lus10023587 [exp]	24.2	0.8432
					Lus10007927 [exp]	25.6	0.8432

Compare expression of checked genes

Lus10032011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.