Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26950 494 / 2e-171 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035181 [exp] 808 / 0 AT3G26950 656 / 0.0 unknown protein Lus10032011 [exp] 560 / 0 AT3G26950 575 / 0.0 unknown protein Lus10035179 [exp] 405 / 2e-138 AT3G26950 304 / 2e-98 unknown protein Lus10035180 [exp] 65 / 2e-12 AT3G26950 96 / 6e-24 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325500 [exp] 553 / 0 AT3G26950 647 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032012 pacid=23161294 polypeptide=Lus10032012 locus=Lus10032012.g ID=Lus10032012.BGIv1.0 annot-version=v1.0 ATGAAGTACCACCACAACGGATTCCGAAGAAGAAGGGTAGTGTCTTTACGTTCATTCCTCGTCGCCGTTGTACTCTTCACCGGGACCGGCTTGTTTCTCC TCACACGGAGATCTGTGGATCCTCCTCCTTTGGACATCCCTGGATTTCTCCCTAACCTCGGCGAAGGAAGGGGAGGGGGAGATCAGACGCGAGGTTCCAG TGATTTGAACTTGCTGATTAGTGATGCGATTAAGATTGATCAGTACGCCGGCAATGAGACGAGAGAGGCATCGGCGAAGAAGTCATGCGCAACGGTTGAG GAAATGGGAGAGAGCTTCAAGGATGGGCCGTGGAAGGATAGCATGAGAGTTAGGGAGATCATTCGACGCCACTTTCTCGTCAATGCCTATTCCAACCAAT CGTTTACACTGGGTGAAGTCAAGCATCTATGGAGGAAAAATGGATGTCTAAAGAAATATGGAAAACACTTGGTTATAAGGATTGATGACTTTCTGAAGCC AACTAAAACAAACGTCTTGTGCAGCAACTGGAGGAAGTGGGAGCAACCAATCATATGGTTTCAAAATACAACCGATGCAATGGCCAGTCAGTTTTTCTTA AAAAGCATTCACCCTGAGATGAGAACCGTTGCAGCCGATTTATTTGGACAGCCAGAACAACTTCAAAGTCGACCTAATGTTTTTGGCGAGTTGATGGCAT TTCTCATATCTCCATCAGAAGAGGTTAAGGAGGCAGTCGACATGGTGCTTGCTGGAGGTCCGGATCCTGATATCTCCTTGCACATGCGAATGCTTATGAA CAGGCCGGTGAAAGCTGTGCAGGCAGGATTGAACTGTATTAGAAAAGCCATGCAAAATTTACAAGATAAGCAAAGACCCAGGCTGGTTATTGTATCCGAT ACACCATCTTTTGTGAAAAGCCTTGTTCCCAACATAAGTGGATTTGCAGAGGTGCTTCATTTCGATTATAAGAAGTTCCAAGGGAACATCCCTCGGGATG GCAAGACACTGCAGAATCTGGAATTTAGAGCCAAGGATTGGGGTCCTGCACCAAGATGGGTCGCATTTGTGGATTTCTTCTTAGCAGCACGCGCCAAGCA TGCAGTTATATCAGGGGCACACAAACGTGTTGGAACAACCTATGCTCAACTAGTTGCAGCCCTTGCAGCAGCTAACCAACTGGCGGCGAATCAAACGCAG CCTAGGTTTTCATTCTTGAGCAGTTTCCATAACAATCTATTGAGAGACGGATTGAGGCTGCAGAATGGGTGGGGACATGTTTGGAACAGGTTTGCAGGTC CATTGAGCTGCGGAAACCAGCCGAATCAATGTGCTTTCACGCCTCTTTCTCCCCTGGCTTGGTGGGATGGTCTTTGGCAATCTCCTATTTCAAGGGACGT TCAGAAGCTGTCCATGTTTGGCGTCACCCTCTCTGGTTTGGGCACAGTGGATGAAAACGAACTCAAGTCCTACTGTGCTTCAAAGAAAACCACTGTGAGA ACAGTTGTGCTTATATAG
AA sequence Show only first row Show all	>Lus10032012 pacid=23161294 polypeptide=Lus10032012 locus=Lus10032012.g ID=Lus10032012.BGIv1.0 annot-version=v1.0 MKYHHNGFRRRRVVSLRSFLVAVVLFTGTGLFLLTRRSVDPPPLDIPGFLPNLGEGRGGGDQTRGSSDLNLLISDAIKIDQYAGNETREASAKKSCATVE EMGESFKDGPWKDSMRVREIIRRHFLVNAYSNQSFTLGEVKHLWRKNGCLKKYGKHLVIRIDDFLKPTKTNVLCSNWRKWEQPIIWFQNTTDAMASQFFL KSIHPEMRTVAADLFGQPEQLQSRPNVFGELMAFLISPSEEVKEAVDMVLAGGPDPDISLHMRMLMNRPVKAVQAGLNCIRKAMQNLQDKQRPRLVIVSD TPSFVKSLVPNISGFAEVLHFDYKKFQGNIPRDGKTLQNLEFRAKDWGPAPRWVAFVDFFLAARAKHAVISGAHKRVGTTYAQLVAALAAANQLAANQTQ PRFSFLSSFHNNLLRDGLRLQNGWGHVWNRFAGPLSCGNQPNQCAFTPLSPLAWWDGLWQSPISRDVQKLSMFGVTLSGLGTVDENELKSYCASKKTTVR TVVLI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26950			unknown protein		Lus10032012 [exp]	0	1
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10000553 [exp]	3.5	0.7962
AT5G14500			aldose 1-epimerase family prot...		Lus10032084 [exp]	7.2	0.7746
AT1G79640			Protein kinase superfamily pro...		Lus10000416 [exp]	9.5	0.7879
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10004317 [exp]	15.5	0.7658
AT1G67390			F-box family protein (.1)		Lus10029083 [exp]	20.2	0.7141
AT3G30841			Cofactor-independent phosphogl...		Lus10034089 [exp]	20.5	0.7716
AT3G03790			ankyrin repeat family protein ...		Lus10013648 [exp]	20.8	0.7842
AT5G04460			RING/U-box superfamily protein...		Lus10038656 [exp]	22.0	0.7411
AT1G17820			Putative integral membrane pro...		Lus10018266 [exp]	23.8	0.7742
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10033335 [exp]	26.7	0.7693

Compare expression of checked genes

Lus10032012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.